Protein Info for MPMX19_05378 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 505 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 281 to 304 (24 residues), see Phobius details PF02743: dCache_1" amino acids 103 to 263 (161 residues), 51.7 bits, see alignment E=1.4e-17 PF22588: dCache_1_like" amino acids 182 to 266 (85 residues), 62.7 bits, see alignment E=4.7e-21 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 330 to 488 (159 residues), 118.5 bits, see alignment E=1.2e-38 PF00990: GGDEF" amino acids 333 to 483 (151 residues), 110.5 bits, see alignment E=1.1e-35

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (505 amino acids)

>MPMX19_05378 hypothetical protein (Azospirillum sp. SherDot2)
MQRHFSPLLAAALALAAVVMMTTHLVWQDRQRTSARMEALAADMAKVVEAHVLHTTKGAD
IALRQAATLVDEAGSLGAVQNPIYWRRLRDALANVDGGETLWLFDTKGNGVAGTGRQMDG
PLNIADRPHFQAVLAGADLVVSPALRSRLDNRIVFTISRPIRDWTGDIIGVASAGMKTEW
LVNFYAMMSFGLDTTVTVFRTDGEIVARQPDLAANLGKNNRNGQLFREQLPQAPVGTYWS
QSVLDGKERLAAYRLIPDLNLVVYAGIEGESAFAAWRVRSLWFVAEVTMTTTLVLLLLVA
SARMIRSGHRNQMRALEAESVALQLGAELHQARRDPLTGLPARGLFLELAEGMRQSAGQR
GLVLAFLYIDLDGFKAVNDRQGHDQGDKVLTMVAEIMRRTTRDGDLLGRLGGDEFVVCLS
GHVPDIKTVATSVATRIITEVRDLDMGVGCSIGISLTAGSCNDLPCSLRQADAAMYRAKQ
MGKGAWFIHESAQEPCPSCDDRAIA