Protein Info for MPMX19_05117 in Azospirillum sp. SherDot2

Annotation: HTH-type transcriptional regulator HexR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 transmembrane" amino acids 188 to 205 (18 residues), see Phobius details amino acids 268 to 278 (11 residues), see Phobius details PF01418: HTH_6" amino acids 17 to 89 (73 residues), 71.4 bits, see alignment E=7.7e-24 PF01380: SIS" amino acids 148 to 273 (126 residues), 45 bits, see alignment E=1.4e-15

Best Hits

Swiss-Prot: 40% identical to HEXR_ECOLI: HTH-type transcriptional regulator HexR (hexR) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 89% identity to azl:AZL_a09930)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (305 amino acids)

>MPMX19_05117 HTH-type transcriptional regulator HexR (Azospirillum sp. SherDot2)
MTSPVNSTAASPTPLDILDEIRRLRGELKRSEGRIADLVLADPRRVLDLNVTSLAQAAEV
SEATVVRFCRSVGCAGFPDFKLRLAESQARDALRDEVRGGTPYVSKDVAPDDDVGTLARK
IFSSSAAALTAASSTLDDEALERAIALLAGASRVLCVGTGGSSALAQDAAHKLLRFGADA
QPCADPVLARMLLVNMTAGGVLLALSNTGRSGTINELAAAARSQGTAVVAITAPRSPLAA
MASVVIASRPVEDTEMYTPMASRLVHLTLIDVLSTGVALRLGDPAVRLLAKVKAAINAGR
LPPLS