Protein Info for MPMX19_04224 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 870 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR03506: flagellar hook-basal body protein" amino acids 6 to 339 (334 residues), 136.3 bits, see alignment E=1e-43 amino acids 649 to 851 (203 residues), 121.9 bits, see alignment E=2.5e-39 PF00460: Flg_bb_rod" amino acids 7 to 37 (31 residues), 25.1 bits, see alignment (E = 2e-09) PF22692: LlgE_F_G_D1" amino acids 84 to 160 (77 residues), 28.6 bits, see alignment E=1.9e-10 PF06429: Flg_bbr_C" amino acids 826 to 867 (42 residues), 59.1 bits, see alignment 3.7e-20

Best Hits

KEGG orthology group: K02390, flagellar hook protein FlgE (inferred from 92% identity to azl:AZL_a05510)

Predicted SEED Role

"Flagellar hook protein FlgE" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (870 amino acids)

>MPMX19_04224 hypothetical protein (Azospirillum sp. SherDot2)
MSIFGSMTTAVLGLNAQSKALGHISDNIANSSTIGYKRVDSAFETMVLQSSQRLHEPGGV
TAQPVFMNNIQGSLTQVQSPTNIAIQGQGFFSVTKVATQGSSTLVQTQTGTVNSSAAFYT
RAGDFELDKSRYLVNSAGYALNGWLVDPVTGVLHKDQVAPIQVNSLIDKPVATNTIDLAA
NLPATPKEGEKVPDSSIQIFDSQGNPRTVNFKWRQQADSSWRMVLDAPGSNTKPVDGTFT
GNPATVTFGQNIAGQTAVAQVNVITIAGNNTNGQDNLRIGDTYSVKVDGTNYSLKVTADN
IGSLRTYSGLAGALANQINSASPAASVLATSSGQTIRVTARNPGTPFKLNTDVVSGTNTT
NTIVNQTSTAATASSGEIDKFQFPQTQVEVGDSFTINVNGTPISYTVTAATYQSYSSVSD
VVSQLAGKINQALGSSVTASSAGNILSIQANAVNTNVTSSATVTNSSTAVNTMSSLPSVS
SVAGVRQSRTVTLTGTPGDIGTQYTLSINGTAVTYSTTGEEMTMEDITAALANKINSNTS
LPVTATAQGGVITVTSKTAASPTNTNTMTGTGTVTLNGSTIDIGDTYNITDSGGTTYPLT
ITNANYGLYDTPAKVMQYFASVVPGATASGNTLTLAGASGTVVDAPAAQFTLDQSAVAGQ
TPAHIGLTFGKTPETVGTLTNISTALVGTGSAVSAANQSAGSDANVTFTVDYGFGPQQIT
LNLGKYQKPGGLTQYAGEEINVTQLVQNGAPRGQFKDVVFGDNGTVMVNYDNGRSKMVAK
VPIITFNNPNALQRESGGVFIESEEAGKPNFNDPETNGAGAVVANSVESSNVDIADEFTK
MIVTQRSYSANAKIVTTSDEMLQEVLGLKR