Protein Info for MPMX19_03997 in Azospirillum sp. SherDot2

Annotation: C4-dicarboxylate TRAP transporter large permease protein DctM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 6 to 39 (34 residues), see Phobius details amino acids 51 to 71 (21 residues), see Phobius details amino acids 99 to 123 (25 residues), see Phobius details amino acids 142 to 166 (25 residues), see Phobius details amino acids 173 to 200 (28 residues), see Phobius details amino acids 221 to 242 (22 residues), see Phobius details amino acids 248 to 269 (22 residues), see Phobius details amino acids 279 to 301 (23 residues), see Phobius details amino acids 321 to 349 (29 residues), see Phobius details amino acids 361 to 383 (23 residues), see Phobius details amino acids 404 to 427 (24 residues), see Phobius details PF06808: DctM" amino acids 10 to 423 (414 residues), 289.3 bits, see alignment E=2.3e-90 TIGR00786: TRAP transporter, DctM subunit" amino acids 21 to 428 (408 residues), 368.6 bits, see alignment E=1.8e-114

Best Hits

KEGG orthology group: None (inferred from 64% identity to dia:Dtpsy_1375)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>MPMX19_03997 C4-dicarboxylate TRAP transporter large permease protein DctM (Azospirillum sp. SherDot2)
MDQTTASIVVVVTMFLMLGAGVWVALALAGVGFVAMALFTARPVGMVMATNIWGASTSWT
LTALPLFIWMGEILFRTRISSDMFKGLAPWTGWLPGRLMHVNIIGCSIFAAVSGSSAATA
ATIGRMTIPELNRRGYDPMMTLGSLAGAGTLGLLIPPSIIMIVYGVAADVSIARLFIAGV
IPGIVLTGLFMLYVGGWSLLNPDRVPPPEPSQSFGEKIRDTGALIPVMLLIAAVLGSIYV
GIATPTEAAGIGVLGSLVLALVTGTLNWTTFRDSLFGAAHTSCMIGFILAGAAFLTVAMG
YTGIPRLLAEWITTMQLSPAALLVALTAFFVVMGCFLDGISMVVLTTSVILPMVQRAGID
LLWFGIYIIIVVEMAQITPPVGFNLFVLQSMTGKDIFTIGKASLPFFLLMVVMVALLWVF
PGMVSWLPSMMIG