Protein Info for MPMX19_02877 in Azospirillum sp. SherDot2

Annotation: ATP-dependent RecD-like DNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 PF13604: AAA_30" amino acids 9 to 192 (184 residues), 66.6 bits, see alignment E=5.1e-22 PF13245: AAA_19" amino acids 27 to 151 (125 residues), 62.9 bits, see alignment E=7.2e-21 PF13538: UvrD_C_2" amino acids 332 to 379 (48 residues), 56.9 bits, see alignment 3e-19 PF01443: Viral_helicase1" amino acids 334 to 379 (46 residues), 21.3 bits, see alignment 4.3e-08

Best Hits

KEGG orthology group: K01144, exodeoxyribonuclease V [EC: 3.1.11.5] (inferred from 95% identity to azl:AZL_b02900)

Predicted SEED Role

"RecD-like DNA helicase Atu2026"

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (400 amino acids)

>MPMX19_02877 ATP-dependent RecD-like DNA helicase (Azospirillum sp. SherDot2)
MQSDSPTDEQHRAIQAIDAWYKDDDAQQVFWLAGEAGTGKTKTTVFALEHLLERRRLTDY
VVGAPTGKAAQVLRQKGIDGAATLHSLLYAPRKDGDSGELIFARRNDGPVADADLIVCDE
GSMIGDDLARDLMRTGKKILVIADDYQLPPVSGQGLFTSGEPDFRLTEPHRTARESPVIR
LAHLLRRQEMPRRFGSVGKVHVLPLEHRTQSLVMRQSSQAICGTHRVRTTYTKRMRTLLG
HDSTMPQAGERVICRRNQKDEGLFNGMIGALTRPAAEAQGRDAGLWSLGVQMEDEVRSRS
KLIVHPWMFQAHYTEGMVQPRVGKDIQLYDWAWLITCHASQGSEFPSVTVVDDSAAFREH
RWRWLYTAVTRSREELVLLLRNADLGGPWQVPEFDDCLPA