Protein Info for MPMX19_02082 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 59 to 80 (22 residues), see Phobius details amino acids 270 to 288 (19 residues), see Phobius details amino acids 311 to 328 (18 residues), see Phobius details PF00563: EAL" amino acids 187 to 417 (231 residues), 147.9 bits, see alignment E=1.7e-47

Best Hits

KEGG orthology group: K13593, cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF (inferred from 86% identity to azl:AZL_024750)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>MPMX19_02082 hypothetical protein (Azospirillum sp. SherDot2)
MKALTADFRPGTAVPTAAAPTTPVPAMTLLTHLVYALAYLIAGGSAGAALWALRPEADPL
VACLVGALVVLAGALVHEAVTRLERERKAARRIARLNDRVEELAQLLERRLAADPDAQPD
GGVRYDAVMQEVKLLQSLVARLTERRAPRPPSASGERRPAPSAPPSAPPSAAAVPAAPPM
DDAAVLEAVRDALKADRIDVYLQPIVSLPQRKHRFYEVFSRVRAADGQQIMPDRYLDIAE
REGLIATIDNLQLVRCVQLIRETERRQHAIGFFANISAATLADAEFMRQFLNMMAQNHAL
VPKLVFELSQHAVSAGGAVTMGILSQLARLGFRFSMDQVTDLAIDLDRLLRHEFRCIKLD
RALVLDPANAGRIRELRHRCAAEGIDLIVEKIETENQLVDVLDTGFDFGQGYLFGEPRLS
RKPE