Protein Info for MPMX19_01813 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 transmembrane" amino acids 49 to 66 (18 residues), see Phobius details TIGR00225: C-terminal processing peptidase" amino acids 174 to 475 (302 residues), 232 bits, see alignment E=4.9e-73 PF00595: PDZ" amino acids 206 to 279 (74 residues), 37.5 bits, see alignment E=5e-13 PF17820: PDZ_6" amino acids 227 to 281 (55 residues), 43.8 bits, see alignment 3.3e-15 PF03572: Peptidase_S41" amino acids 308 to 472 (165 residues), 153.7 bits, see alignment E=6.7e-49

Best Hits

KEGG orthology group: K03797, carboxyl-terminal processing protease [EC: 3.4.21.102] (inferred from 89% identity to azl:AZL_022240)

Predicted SEED Role

"Carboxyl-terminal protease (EC 3.4.21.102)" (EC 3.4.21.102)

Isozymes

Compare fitness of predicted isozymes for: 3.4.21.102

Use Curated BLAST to search for 3.4.21.102

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (559 amino acids)

>MPMX19_01813 hypothetical protein (Azospirillum sp. SherDot2)
MAQFDHSVCDHGVCDQNAPSHVPSFRISALSGALISGVARRFSRPLRHLAFQFSTAALLA
TTALAGTPQAANTAPQPVTEQVFSVGFAKIAEVYLEPVSFNRLGMDGLKGLTALDPSVTV
EHAGSTVRLYVSGALAAEYGTAADGDAAGWAVLTTRIIDRARVYSPTLAKATPERLYQVV
FDGVTADLDGYSRYTGVQRASNERAQREGYGGVGLSLDTTSNGRVIVHDVMPHSPAERVG
IFDGDQLLAIDGDLTTRMSAADMRERLRGPTGTLVTLTVARDNGAPRRLPLRRERVVPNT
VTYSLSGDVGIVKLDRFNATTASSLRSAVTSIRQAAGPTLQGMVLDLRGNPGGLLDQAVA
VADLFIRRGRIISTEGRNPESRQRFDANPDDLLDGLPLVVLVDGRSASSAEVVAAALQDS
GRAVVVGASSYGKGSVQTVNRLPNDGELFLTWSRIYTPAGYTLHRQGVQPTVCTSRAGQT
DPEALLSDLREGRLRPAQVASWRSKAADDEHALSALREACPWKEHEPELDLKVAMRLLAE
PGLYQRAVATAVVNTVAER