Protein Info for MIT1002_01231 in Alteromonas macleodii MIT1002

Annotation: SpoVR family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 515 PF04293: SpoVR" amino acids 26 to 442 (417 residues), 593.5 bits, see alignment E=1.8e-182 PF24755: YcgB" amino acids 447 to 496 (50 residues), 87.8 bits, see alignment 3.8e-29

Best Hits

Swiss-Prot: 73% identical to YCGB_ECOLI: Uncharacterized protein YcgB (ycgB) from Escherichia coli (strain K12)

KEGG orthology group: K06415, stage V sporulation protein R (inferred from 96% identity to amc:MADE_02753)

Predicted SEED Role

"FIG004684: SpoVR-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (515 amino acids)

>MIT1002_01231 SpoVR family protein (Alteromonas macleodii MIT1002)
MTTDAMAKENSKPETSKRHLLSDGPDWTFPLIEEYEQHIDRIAKKFKLDTYPNQIEVITA
EQMMDAYASIGMPLNYTHWSFGKKFIQTEQQYRRGQMGLAYEIVINSDPCIAYLMEENTI
TMQALVMAHACYGHNSFFKGNYLFKTWTDASSIIDYLVFAKNYIAKCEQKYGFDEVENML
DSCHALMNYGVDRYKRPQKISLQEEKNRQEEREAYLQSQVNELWRTLPNSPHSKHKEKIR
FPQEPQENLLYFIEKNAPLLEPWQREIVRIVRKVSQYFYPQKQTQVMNEGWACFWHYHIL
NEMYDEGLVSDRFMMEFLHSHSSVVMQPEYNSPYYSGINPYALGFSMFMDIKRVCQSPTE
EDYKYLPSIAGKDWLETVHFAMENFKDESFISQFLSPKVIRDFKLFALEDDTTKPFIAVS
AIHDEMGYQIIKEKLSAQYNLSNLEPNIQVHNVDVRGDRSLTLRYIPQRGIPLGDSKDEV
MRHLHRLWKFDVRLEQDNGDDGIDVISECKRAPQA