Protein Info for GFF4448 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Fimbriae-like adhesin SfmA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 185 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00419: Fimbrial" amino acids 35 to 185 (151 residues), 123.7 bits, see alignment E=4.1e-40

Best Hits

Swiss-Prot: 100% identical to FIMA1_SALTY: Type-1 fimbrial protein, A chain (fimA) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K07345, major type 1 subunit fimbrin (pilin) (inferred from 97% identity to spq:SPAB_03020)

Predicted SEED Role

"Fimbriae-like adhesin SfmA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (185 amino acids)

>GFF4448 Fimbriae-like adhesin SfmA (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MKHKLMTSTIASLMFVAGAAVAADPTPVSVSGGTIHFEGKLVNAACAVSTKSADQTVTLG
QYRTASFTAIGNTTAQVPFSIVLNDCDPKVAANAAVAFSGQADNTNPNLLAVSSADNSTT
ATGVGIEILDNTSSPLKPDGATFSAKQSLVEGTNTLRFTARYKATAAATTPGQANADATF
IMKYE