Protein Info for GFF2611 in Sphingobium sp. HT1-2

Annotation: Threonine-synthase-like protein 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

KEGG orthology group: K01733, threonine synthase [EC: 4.2.3.1] (inferred from 75% identity to azl:AZL_b02460)

Predicted SEED Role

"Threonine synthase (EC 4.2.3.1)" in subsystem Threonine and Homoserine Biosynthesis (EC 4.2.3.1)

MetaCyc Pathways

aspartate superpathway (25/25 steps found)
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I (18/18 steps found)
superpathway of L-isoleucine biosynthesis I (13/13 steps found)
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II (13/15 steps found)
superpathway of L-threonine biosynthesis (6/6 steps found)
L-threonine biosynthesis (2/2 steps found)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.2.3.1

Use Curated BLAST to search for 4.2.3.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (413 amino acids)

>GFF2611 Threonine-synthase-like protein 2 (Sphingobium sp. HT1-2)
LNHDLNLTTDRPTFVTHLECSLTGERYEADRLHGLSAAGKPLLVRYDLDGVRATLTKEAL
AARPMDLWRWRELLPVRQTSNIVSLGENATPLIPLPRTAKRLGGAQLLAKDEGRLPTASF
KARGLVMAVSMAKELGVTQVAMPTNGNAGAALAAYAAVAGMESVIFCPADTPEVNVREIA
AQGARVYRVNGYIDDCGAIVGQGVKERGWFDFSTLKEPYRIEGKKTMGLELAEQLGWELP
DAIFYPTGGGTGLIGMWKAFDELEKIGFIGSKRPKMFAVQAEGCAPMVRAFEQGVEFAER
WEDAQTIAMGIRVPKAVGDFLILRAVRESGGAALAVSDAAIAAAVRDVARDDGLLLCPEG
GATLAAYSRALDEGLIGRDERAVLFNCASGLKYPLEDQSRTLDRHAPIDFASL