Protein Info for GFF259 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: DNA recombination protein RmuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 476 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 343 to 357 (15 residues), see Phobius details PF02646: RmuC" amino acids 137 to 433 (297 residues), 363.1 bits, see alignment E=4.8e-113

Best Hits

Swiss-Prot: 100% identical to RMUC_SALTI: DNA recombination protein RmuC (rmuC) from Salmonella typhi

KEGG orthology group: K09760, DNA recombination protein RmuC (inferred from 99% identity to seg:SG3482)

Predicted SEED Role

"DNA recombination protein RmuC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (476 amino acids)

>GFF259 DNA recombination protein RmuC (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
VDITLMISAVVALAAGAVIGWLATKAHADQIRADLIEERRELDIELSAARQQLAQEAHWR
SECELLNNELRSLHSINTSLEADLREVTTRLEATQQHAEDKIRQMINSEQRLSEQFENLA
NRIFEHSNRRVDEQNRQSLNSLLTPLREQLDGFRRQVQESFGKEAQERHTLAHEIRNLQQ
LNAQMAQEAINLTRALKGDNKAQGNWGEVVLARVLEASGLREGYEYETQVSIENDARSRM
QPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYTREAALQEHIASVRNHIRLLGRKDY
QQLPGLRSLDYVLMFIPVEPAFLLALDKQPELITEALKNNIMLVSPTTLLVALRTIANLW
RYEHQSRNAQHIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLASGRGNVLA
QAEAFRGLGVEIKREINPDLAEQAVTQDEEYRLRSIPEGRQDEHYPNDERVKQQLS