Protein Info for GFF200 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative metabolite transport protein yaaU

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 transmembrane" amino acids 41 to 63 (23 residues), see Phobius details amino acids 76 to 98 (23 residues), see Phobius details amino acids 108 to 126 (19 residues), see Phobius details amino acids 132 to 153 (22 residues), see Phobius details amino acids 165 to 188 (24 residues), see Phobius details amino acids 194 to 215 (22 residues), see Phobius details amino acids 264 to 286 (23 residues), see Phobius details amino acids 305 to 325 (21 residues), see Phobius details amino acids 338 to 369 (32 residues), see Phobius details amino acids 389 to 412 (24 residues), see Phobius details amino acids 424 to 443 (20 residues), see Phobius details PF00083: Sugar_tr" amino acids 50 to 454 (405 residues), 175.9 bits, see alignment E=1.5e-55 PF07690: MFS_1" amino acids 50 to 408 (359 residues), 128 bits, see alignment E=4e-41

Best Hits

Swiss-Prot: 86% identical to YAAU_ECOLI: Putative metabolite transport protein YaaU (yaaU) from Escherichia coli (strain K12)

KEGG orthology group: K08368, MFS transporter, putative metabolite transport protein (inferred from 100% identity to sea:SeAg_B0088)

Predicted SEED Role

"Putative metabolite transport protein yaaU"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (468 amino acids)

>GFF200 Putative metabolite transport protein yaaU (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MAAETPYPAYRCALPVLKQDITMQQPRNFDDLKFSSIHRRIMLWGSGGPFLDGYVLVIIG
VALEQLTPLLHLDAEWIGALGAATLAGLFIGTSLFGYICDKVGRRKMFLLDIIAIGVISV
ATMFVSTPLELLVMRVLIGIVIGADYPIATSMITEFSNTRQRAFSIGFIAAMWYVGATCA
NLVGYWLYDMEGGWRWMLGSAFIPCLIILIGRFDLPESPRWLLRKGRVKECEQMMIKLFG
EPVCFDDELPQETRFLQLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGWEQG
RNAALGNVVISLFFMLGCIPAMFWLNSIGRRPLLIGSFAMMTIALALLGLVSNLGIILVV
VAFAVYAFFSGGPGILQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFITRYG
INNVMLIGALISLVGLGVSVMFAPETRGLTLTQTGNMTLRGTPSDNPR