Protein Info for Ac3H11_3232 in Acidovorax sp. GW101-3H11

Annotation: Aerotaxis sensor receptor protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 transmembrane" amino acids 170 to 192 (23 residues), see Phobius details amino acids 198 to 222 (25 residues), see Phobius details PF00989: PAS" amino acids 19 to 110 (92 residues), 41 bits, see alignment E=4.5e-14 TIGR00229: PAS domain S-box protein" amino acids 20 to 113 (94 residues), 56.1 bits, see alignment E=2e-19 PF13426: PAS_9" amino acids 21 to 104 (84 residues), 50.6 bits, see alignment E=5.1e-17 PF08447: PAS_3" amino acids 28 to 109 (82 residues), 61 bits, see alignment E=2.7e-20 PF00672: HAMP" amino acids 217 to 257 (41 residues), 25.4 bits, see alignment 3.5e-09 PF00015: MCPsignal" amino acids 329 to 484 (156 residues), 151 bits, see alignment E=7.9e-48

Best Hits

KEGG orthology group: K03776, aerotaxis receptor (inferred from 73% identity to dac:Daci_2372)

Predicted SEED Role

"Aerotaxis sensor receptor protein" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165IVL9 at UniProt or InterPro

Protein Sequence (550 amino acids)

>Ac3H11_3232 Aerotaxis sensor receptor protein (Acidovorax sp. GW101-3H11)
MNLPVSQHEYAFPKGQTLVSTTDLKGRILYCNPMFIEVSGYEKEELLGQPHNMIRHPDMP
EEAFRDMWETIAKGIPWSAPVKNRRKDGSFYWVMANVTPLMQGDQPTGYMSVRTEATREQ
IHGADALYKQMQSEKQAGTLVHRLSAGQLVKETLWGRVGRALALGPMGKMMVCTLLLVVA
SWCAALLGGHALSLASGAAWLGVVLLALGMAVYLHQVTVAPLSQMLMWANRMAAGDLTQK
ISASRSDTVGQLQKALAQLNVNLLSIVRDARQESEHMQVSTREIAQGNHDLSSRTEAQAS
NLQQTAASMEEITGTVKQTAESARQATVLATQATQVTERSSSAVDGVADTMKQIQAASGR
ISEITQLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLSHRTQSAAKEIRQL
IDDSANKVSEGHEKTDAAQKTMTESLDLVRRVNTLIGEIHSASNEQLSGISQVNSAVAQL
DTITQQNAALVEENAASAMQLNGQAQTMTETVQVFRIDASAPAQVRDAVALRKEMKGQGG
SSSSRALAAV