Protein Info for Pf6N2E2_1159 in Pseudomonas fluorescens FW300-N2E2

Annotation: Sialic acid transporter (permease) NanT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 transmembrane" amino acids 40 to 63 (24 residues), see Phobius details amino acids 69 to 89 (21 residues), see Phobius details amino acids 100 to 117 (18 residues), see Phobius details amino acids 124 to 145 (22 residues), see Phobius details amino acids 157 to 181 (25 residues), see Phobius details amino acids 188 to 205 (18 residues), see Phobius details amino acids 248 to 267 (20 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 313 to 330 (18 residues), see Phobius details amino acids 336 to 362 (27 residues), see Phobius details amino acids 374 to 393 (20 residues), see Phobius details amino acids 399 to 421 (23 residues), see Phobius details PF07690: MFS_1" amino acids 38 to 298 (261 residues), 131.1 bits, see alignment E=4.7e-42 amino acids 288 to 425 (138 residues), 35.6 bits, see alignment E=5.2e-13 PF00083: Sugar_tr" amino acids 66 to 220 (155 residues), 76.4 bits, see alignment E=2.2e-25

Best Hits

KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a2923)

Predicted SEED Role

"Sialic acid transporter (permease) NanT" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZVJ1 at UniProt or InterPro

Protein Sequence (431 amino acids)

>Pf6N2E2_1159 Sialic acid transporter (permease) NanT (Pseudomonas fluorescens FW300-N2E2)
MEKTMTDCVTTGTGRTGPFSWYGPLSKNEKRTFWSCKIGYALDGMDTQMLSFVIPTLIAT
WGISKGDAGLIGTCTLLASAAGGWIAGILSDRIGRVRTLQLTVLWFAFFTFLCGLAQNYE
QLLVARTLMGFGFGGEWTAGAVLIGEVIRSQDRGKAVGMVQAGWALGWGLTALLYAGLFS
FLPPEDAWRALFLIGLVPALFVLVIRRLVKESDTFEHAVRERQAKPELGSRWAFFEIFAP
RMLSTTLRASLLTTGALGGYYAITTWLPTYLKTERGLSVLGTGGYLAMVIVGSYIGYVTS
ALLTDAIGRKKNFILFAVGSMAIVLAYTQLPIDNTWMLWLGFPLGFFASGIFAGMGAFLT
ELFPTRMRGSGQGFCYNAGRSIAALFPLFIGALSNTLPIGTGIGVFAAGAYGVVILAALS
LPETRGRQLES