Protein Info for MPMX19_02398 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 794 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 136 to 157 (22 residues), see Phobius details PF00672: HAMP" amino acids 156 to 201 (46 residues), 25.8 bits, see alignment 4.3e-09 TIGR00229: PAS domain S-box protein" amino acids 212 to 339 (128 residues), 60.6 bits, see alignment E=1.6e-20 PF13188: PAS_8" amino acids 215 to 265 (51 residues), 30.4 bits, see alignment 1e-10 PF00989: PAS" amino acids 216 to 329 (114 residues), 36.5 bits, see alignment E=1.8e-12 PF08448: PAS_4" amino acids 222 to 334 (113 residues), 42.4 bits, see alignment E=3e-14 PF13426: PAS_9" amino acids 226 to 331 (106 residues), 34.8 bits, see alignment E=6.7e-12 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 340 to 512 (173 residues), 113.7 bits, see alignment E=7.1e-37 PF00990: GGDEF" amino acids 343 to 511 (169 residues), 130.8 bits, see alignment E=1.7e-41 PF00563: EAL" amino acids 533 to 771 (239 residues), 232.7 bits, see alignment E=1.6e-72

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (794 amino acids)

>MPMX19_02398 hypothetical protein (Azospirillum sp. SherDot2)
MTLRRKIRWLTWIGLIGCLMAAIPALYLLRQGMIAERGQLAAALVESAGLLLQDLERSAA
SGAISGDEARDRARTALLALSAKPFHVKLFTDGVVPPNWPAIDRAVTAEGRFEAWGWAIA
AAGDIGDLDRDFLIEASGFLLFLAALLVLSWPGSLFLSQHVVGPLEALSDRMRLLTEGRT
DIDIPGRERCDEFGAMARAMEFFRRAAIALIERDERLAGIMNNVGEAILLVDGRGRIEEH
NPAAVALFGVPAGELRGRPLSRLFAAADRARIDALLAGMAADTGVPEPVREEALGIERAG
SGERIEASLSVSPLVVQGRRGFVCALADVTERVRHERELMRLATRDRLTGLPNRAMIESL
LEAAVERSCRYRRPFAVLCLDLSRFKLITDTLGHQAGDALLQEVAQRIVASVRAADLVGR
IGTDDFAVLLEEIRDADEAAAIAGRILDAFDAPVTLPGCEHYVRPAVGIAVYPTDLAGVG
AAEGHRDGDDPQALLRAAETALYAAKRMGGRRHAFFRPELAEQARRQLALDGDLRAALAL
KQFRLHYQPKVSLIDYSLEGFEALLRWEKPGQGQTQGTMIPPGEFIPVAEETGFIVPLGD
WVLDEACRQMREWLDAGMEPVPVAVNISPKHLRNRSAEDFRRIIDRHGLPPGLIELEITE
GAVMQDLDHALAVLAALKAMGIRVAVDDFGTGHSSLSYLKRLPITTLKIDRSFINGVPNE
REDAGIVSTIIAMADMLGLHVVAEGVEKTEQANFLRHHNCTQVQGWLTGRPVPADAACHL
LMERLRQMAALGAA