Protein Info for MPMX19_01336 in Azospirillum sp. SherDot2

Annotation: Inner membrane amino-acid ABC transporter permease protein YhdY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 368 transmembrane" amino acids 34 to 55 (22 residues), see Phobius details amino acids 102 to 119 (18 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details amino acids 161 to 184 (24 residues), see Phobius details amino acids 203 to 224 (22 residues), see Phobius details amino acids 236 to 253 (18 residues), see Phobius details amino acids 281 to 301 (21 residues), see Phobius details amino acids 307 to 324 (18 residues), see Phobius details amino acids 336 to 354 (19 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 156 to 254 (99 residues), 68.2 bits, see alignment E=3.7e-23 PF00528: BPD_transp_1" amino acids 176 to 359 (184 residues), 82.8 bits, see alignment E=1.4e-27

Best Hits

KEGG orthology group: K09971, general L-amino acid transport system permease protein (inferred from 96% identity to azl:AZL_012920)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (368 amino acids)

>MPMX19_01336 Inner membrane amino-acid ABC transporter permease protein YhdY (Azospirillum sp. SherDot2)
MTDNVQSVGLPDERPPANTVGPIAWLRNNLFNSWYNAILTILVLGLLASAIPPFMNWLLF
RAHGFDATSTVCRQDAGGACWGFISEKLRFIMFGMFPWEQQWRPLVTIAVFIALLVASCD
RRFWKPWFGLVWAAGLALVAVLMWGGVFGLTYVENTLWGGLPLTIILSVIGLAVAFPVSI
LLALGRRSNMPAVKVLCVTYIELIRGVPLISLLFMASVMLPLFLPNGVSIDKLLRAQIAF
IMFAAAYMAEAIRGGLQAIPKGQYEAADGLGLSYWQKMRKIILPQALAVAIPPLVNTFIS
FFKDTSLVIIIGLYDLLGTAKAALSDPSWRGFYREAYLFIGVIYWIFCFSMSKYSQKLER
DLNRGHRR