Protein Info for MMJJ_RS08445 in Methanococcus maripaludis JJ

Annotation: cell division ATPase MinD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 TIGR01969: cell division ATPase MinD" amino acids 1 to 253 (253 residues), 333.1 bits, see alignment E=4.4e-104 PF06564: CBP_BcsQ" amino acids 2 to 142 (141 residues), 42.4 bits, see alignment E=2.5e-14 PF13614: AAA_31" amino acids 2 to 146 (145 residues), 94.6 bits, see alignment E=2.9e-30 PF09140: MipZ" amino acids 2 to 140 (139 residues), 35.6 bits, see alignment E=2.7e-12 PF10609: ParA" amino acids 2 to 230 (229 residues), 72.7 bits, see alignment E=1.3e-23 PF01656: CbiA" amino acids 3 to 208 (206 residues), 80.8 bits, see alignment E=3.5e-26 PF02374: ArsA_ATPase" amino acids 4 to 49 (46 residues), 37.8 bits, see alignment 5.4e-13 PF00142: Fer4_NifH" amino acids 7 to 232 (226 residues), 61.4 bits, see alignment E=4.2e-20

Best Hits

Swiss-Prot: 70% identical to Y169_METJA: Uncharacterized ATP-binding protein MJ0169 (MJ0169) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

KEGG orthology group: K03609, septum site-determining protein MinD (inferred from 99% identity to mmp:MMP1145)

Predicted SEED Role

"Septum site-determining protein MinD" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (262 amino acids)

>MMJJ_RS08445 cell division ATPase MinD (Methanococcus maripaludis JJ)
MIITVASGKGGVGKTTTSANLAVALSKLGKKTIVIDGDISMANLGLIFDFEKKRPSIHEV
LAEECSVRDAIYEHRTGAFVLPASLSIAGYKKSDLDLFPDVINEIADEYDYVIIDAPAGL
NKDMAIHLAIADKILLVVTPELFSIADAMKIKESSEMAGTNVMGIVLNRTGKDFGEMGPD
EIEMILEEKIVGLIPEDENIRNSTLKKMDVIEYNPRCPSSKAYTELALKVTGSYVDIGKI
EEIYNESFFEKLKRSIFSKFKK