Protein Info for MIT1002_01986 in Alteromonas macleodii MIT1002

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 608 PF17899: Peptidase_M61_N" amino acids 6 to 191 (186 residues), 155 bits, see alignment E=2.9e-49 PF05299: Peptidase_M61" amino acids 289 to 405 (117 residues), 151 bits, see alignment E=2.8e-48 PF13180: PDZ_2" amino acids 509 to 583 (75 residues), 29.6 bits, see alignment E=1.1e-10

Best Hits

KEGG orthology group: None (inferred from 82% identity to amc:MADE_01914)

Predicted SEED Role

"protease, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (608 amino acids)

>MIT1002_01986 hypothetical protein (Alteromonas macleodii MIT1002)
MTSALRYTLTISNWRAHQFTIALQIPEHSGSSIELSLPSWIPGSYMVRDFAKSIIELTAN
TSEGHSTENVGDRSVYSLSVTKLDKQTWRVDTDGKPCTVVYSVYANDLSIRSAFMNDQYA
FINGTSAFLNVSGFENVPCEVDIELNDSDSATSNWKAYTSMPSRCESTSPSRWHFVEKNY
DELIDHPIYVGIADTHSFEVDGITFTLLFSGNNNIDYERIANDLTPICKHHLNLFGAPQP
INNYLFMTLLADNGFGGLEHKYSTALLYPRFDLPQVGESEKKTDSYITFLSLCSHEFFHT
WHVKRIKPSVMVKPDLSQETYTDQLWIYEGFTSFYDDVTLARAGVIEPQKYLDIVAQNVS
RLLQNAGRFKQSAAESSFDAWTKFYKQDASATNNIVSYYTKGGIIALGLDLLLRKQSNEQ
VNLDTLMQLLWKHYGVDEKGTPDDVIQNLCTTHFGIDVSEYLNRVVYGTDDVELASLVSE
MGVNYAVRARVSGEDKGGASSLPAIKNQLGATLKPATFGLTVLQVFEGLAAMKAGVLLND
VIIGLDGHIVNAQKLQRLLDNAQTSQVELTLIRDGRLLTLPLEVTQARKEMAYFEITDEE
KLNQWLGK