Protein Info for LU632_RS04260 in Erwinia tracheiphila SCR3

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 54 to 73 (20 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 114 to 138 (25 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 246 to 266 (21 residues), see Phobius details amino acids 281 to 299 (19 residues), see Phobius details amino acids 311 to 330 (20 residues), see Phobius details amino acids 336 to 359 (24 residues), see Phobius details amino acids 374 to 395 (22 residues), see Phobius details amino acids 401 to 420 (20 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 270 (244 residues), 157.8 bits, see alignment E=3.6e-50 amino acids 278 to 420 (143 residues), 41.2 bits, see alignment E=1.1e-14

Best Hits

KEGG orthology group: None (inferred from 83% identity to pao:Pat9b_1879)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (432 amino acids)

>LU632_RS04260 MFS transporter (Erwinia tracheiphila SCR3)
MSLILSSAASPASVPNTRWLRIIPPILITCIISYMDRVNIAFAMPGGMDDDLGITASMAG
LAGGIFFIGYLFLQVPGGRLAVHGNGKRFIGWSLLAWAVLSALTGLASNQYQLLALRFAM
GVSEGGMLPVVLTMIGNWFPDSERGRANAIAIMFVPIAGILTAPLSSWIITGWDWRMLFF
VEGVMSLVVMVLWCFTISNRPQEAKWISEAEKNYLIKMLHEEQLQIKEKNTRNASPGQVM
CEPVMWRLIMVNFFYQTGIYGYTLWLPTILKGLTSGNIEQVGWLAILPYVGAIFGMLLFS
TLSDATGRRKLFIVLPLAGFALCMALSVLLKAYIWWAYVALVGCGVFIQSAAGVFWSILP
RLFSAEVSGGARGVINALGNLGGFCGPYMVGVLIAQYSKDAGVISLAISLGIASLLALTL
PSRCDSPRKEAA