Protein Info for GFF5075 in Sphingobium sp. HT1-2

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 537 PF13007: LZ_Tnp_IS66" amino acids 40 to 118 (79 residues), 41.4 bits, see alignment E=3.9e-14 PF13005: zf-IS66" amino acids 128 to 167 (40 residues), 58.2 bits, see alignment 1.8e-19 PF03050: DDE_Tnp_IS66" amino acids 184 to 471 (288 residues), 334.2 bits, see alignment E=1.4e-103 PF13817: DDE_Tnp_IS66_C" amino acids 478 to 516 (39 residues), 51 bits, see alignment 2.6e-17

Best Hits

KEGG orthology group: None (inferred from 49% identity to bja:blr1783)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (537 amino acids)

>GFF5075 Mobile element protein (Sphingobium sp. HT1-2)
VVAHPEPPVETGPEAGYDELPDNVEQLKAMVLAERARAARLEHILKLINRSTFGKRSEKL
PVDQLALTLEDQNVALGEADGLQDKAAEEAGRYGLRPRRRRAPDAERASLPAHLPRFETV
IEPKNLECACGGTLHKIGEDRSERLDIIPAQHRVMVTIRPRYACRCCSDGVRQASAPAHV
VPGGLPTEALIADVLINKYCDHLPLYRQSKIFARQGIEISRATMANWVGRGIAALMPITD
RMRADALARARLFVDETTVKVLAPGTGKTKTGYMWVIVCDDRAHGGVDPPLALYTYMPGR
GKMWAKQLLGSYQGILQVDAWQAYDQFGKDDGADTGVTKSYCWAHLRRGFVDAGSDAPVA
QDALQRIAEIYGIEKEIRGRTAEERLAVRQERTRPLVEKLHAWFAATAPRMMAGSATSDA
MKYALKRWAGFTRFLDDGRIEIDNNTAERAIRPVTLQRKNALFTGHQLGAENWAAISSLV
ETCKMLDINPYAYLCDVLTRIITRADTDPIDDLLPYCWTDANAAQTSFELSSIASAX