Protein Info for GFF3355 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Flagellar basal-body rod protein FlgC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 TIGR01395: flagellar basal-body rod protein FlgC" amino acids 4 to 134 (131 residues), 171.2 bits, see alignment E=6.8e-55 PF00460: Flg_bb_rod" amino acids 8 to 37 (30 residues), 39.7 bits, see alignment 3.8e-14 PF06429: Flg_bbr_C" amino acids 88 to 132 (45 residues), 52.2 bits, see alignment E=3.4e-18

Best Hits

Swiss-Prot: 99% identical to FLGC_SALTY: Flagellar basal-body rod protein FlgC (flgC) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K02388, flagellar basal-body rod protein FlgC (inferred from 98% identity to ses:SARI_01822)

Predicted SEED Role

"Flagellar basal-body rod protein FlgC" in subsystem Flagellum or Flagellum in Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (134 amino acids)

>GFF3355 Flagellar basal-body rod protein FlgC (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
VALLNIFDIAGSALAAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAAPGQATG
GVKVASVIESQAPEKLVYEPGNPLADANGYVKMPNVDVVGEMVNTMSASRSYQANIEVLN
TVKSMMLKTLTLGQ