Protein Info for GFF1519 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Predicted endonuclease distantly related to archaeal Holliday junction resolvase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 TIGR00252: TIGR00252 family protein" amino acids 16 to 131 (116 residues), 191.5 bits, see alignment E=2.1e-61 PF02021: UPF0102" amino acids 24 to 114 (91 residues), 88.9 bits, see alignment E=1.1e-29

Best Hits

Swiss-Prot: 100% identical to YRAN_SALG2: UPF0102 protein YraN (yraN) from Salmonella gallinarum (strain 287/91 / NCTC 13346)

KEGG orthology group: K07460, putative endonuclease (inferred from 99% identity to stt:t3185)

Predicted SEED Role

"Predicted endonuclease distantly related to archaeal Holliday junction resolvase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (131 amino acids)

>GFF1519 Predicted endonuclease distantly related to archaeal Holliday junction resolvase (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MAQIPARGDCSRQLTRKQAGDAWEAAARRWLESKGLRFIAANVRERGGEIDLIMRDGKTT
VFVEVRYRRSGLYGGAAASVTRSKQHKLLHTARLWLARQNGSFDTVDCRFDVLAFTGNEI
EWFRDAFNDHS