Protein Info for SO2723 in Shewanella oneidensis MR-1

Annotation: HIT family protein (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 118 PF11969: DcpS_C" amino acids 5 to 106 (102 residues), 81.4 bits, see alignment E=7e-27 PF01230: HIT" amino acids 12 to 108 (97 residues), 100.6 bits, see alignment E=6.4e-33

Best Hits

Swiss-Prot: 79% identical to HINT_ECOLI: Purine nucleoside phosphoramidase (hinT) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 96% identity to sbl:Sbal_1798)

MetaCyc: 79% identical to purine nucleoside phosphoramidase (Escherichia coli K-12 substr. MG1655)
3.9.1.-

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8EDM0 at UniProt or InterPro

Protein Sequence (118 amino acids)

>SO2723 HIT family protein (NCBI ptt file) (Shewanella oneidensis MR-1)
MAEETIFSKIIRREIPADILYQDELVTAFRDISPKAPTHILIVPNHLIPTANDMKASDEP
ALGRMMTVAAKLATEAGIAKDGYRLIMNCNKHGGQEVYHIHIHLVGGEPLGPMLSQGQ