Conservation of cofitness between Psyr_0185 and Psyr_5065 in Pseudomonas syringae pv. syringae B728a

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0185 tyrosine recombinase XerC subunit 1.0 Psyr_5065 ATP-dependent DNA helicase UvrD 0.33 15
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0185 tyrosine recombinase XerC subunit 1.00 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas lactucae CFBP13502 0.85 GEMAOFIL_05657 Tyrosine recombinase XerC 0.89 GEMAOFIL_00116 DNA helicase II low > 93
Pseudomonas sp. RS175 0.85 PFR28_04378 Tyrosine recombinase XerC 0.88 PFR28_04523 DNA helicase II low > 88
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2171 Tyrosine recombinase XerC 0.87 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.26 9
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_4416 Tyrosine recombinase XerC 0.88 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.43 7
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_12725 recombinase XerC 0.88 AO356_11990 DNA helicase II 0.32 37
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_842 Tyrosine recombinase XerC 0.89 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.40 5
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_09050 recombinase XerC 0.89 AO353_10055 DNA helicase II 0.47 3
Pseudomonas sp. DMC3 0.83 GFF370 Tyrosine recombinase XerC 0.89 GFF512 DNA helicase II low > 89
Pseudomonas fluorescens SBW25 0.81 PFLU_RS29280 tyrosine recombinase XerC 0.89 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS29280 tyrosine recombinase XerC 0.89 PFLU_RS29900 DNA helicase II 0.31 35
Pseudomonas sp. SVBP6 0.80 COO64_RS01270 xerC tyrosine recombinase XerC 0.87 COO64_RS01845 uvrD DNA helicase II low > 93
Pseudomonas putida KT2440 0.75 PP_5230 Tyrosine recombinase XerC 0.86 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.45 6
Pseudomonas sp. BP01 0.75 JOY50_RS22610 xerC tyrosine recombinase XerC 0.85 JOY50_RS08735 uvrD DNA helicase II low > 84
Pseudomonas stutzeri RCH2 0.75 Psest_3767 tyrosine recombinase XerC 0.78 Psest_4098 Superfamily I DNA and RNA helicases low > 67
Pseudomonas sp. S08-1 0.74 OH686_13785 tyrosine recombinase XerC 0.82 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pseudomonas segetis P6 0.74 MPMX49_04536 Tyrosine recombinase XerC 0.82 MPMX49_00180 DNA helicase II — —
Pseudomonas aeruginosa PA14 0.72 IKLFDK_27050 tyrosine recombinase XerC 0.85 IKLFDK_26200 DNA helicase II low > 100
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS15025 tyrosine recombinase XerC 0.53 ABZR86_RS16965 DNA helicase II 0.73 2
Pectobacterium carotovorum WPP14 0.47 HER17_RS01350 tyrosine recombinase XerC 0.62 HER17_RS01360 DNA helicase II low > 75
Marinobacter adhaerens HP15 0.47 HP15_250 site-specific tyrosine recombinase XerC 0.61 HP15_3403 UvrD/REP helicase low > 73
Serratia liquefaciens MT49 0.47 IAI46_00725 tyrosine recombinase XerC 0.62 IAI46_00735 DNA helicase II 0.49 12
Escherichia coli ECOR38 0.47 HEPCGN_13125 xerC tyrosine recombinase XerC 0.62 HEPCGN_13115 uvrD DNA helicase II 0.78 3
Escherichia coli BW25113 0.47 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.62 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) low > 76
Escherichia coli ECOR27 0.47 NOLOHH_06550 xerC tyrosine recombinase XerC 0.62 NOLOHH_06540 uvrD DNA helicase II low > 76
Escherichia coli Nissle 1917 0.47 ECOLIN_RS21875 tyrosine recombinase XerC 0.62 ECOLIN_RS21885 DNA helicase II 0.70 1
Rhodanobacter sp000427505 FW510-R12 0.47 LRK53_RS02315 tyrosine recombinase XerC 0.52 LRK53_RS01560 UvrD-helicase domain-containing protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_04239 Tyrosine recombinase XerC 0.62 OHPLBJKB_04237 DNA helicase II 0.36 48
Escherichia fergusonii Becca 0.47 EFB2_04826 Tyrosine recombinase XerC 0.62 EFB2_04824 DNA helicase II 0.34 77
Methylophilus sp. DMC18 0.47 GFF1535 Tyrosine recombinase XerC 0.45 GFF1664 DNA helicase II low > 43
Erwinia amylovora T8 0.47 OLJFJH_06415 tyrosine recombinase XerC 0.60 OLJFJH_06425 DNA helicase II low > 58
Pantoea sp. MT58 0.47 IAI47_18400 tyrosine recombinase XerC 0.61 IAI47_18390 DNA helicase II 0.39 22
Escherichia coli ECRC62 0.47 BNILDI_04985 xerC tyrosine recombinase XerC 0.62 BNILDI_04995 uvrD DNA helicase II low > 75
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_15325 xerC tyrosine recombinase XerC 0.52 OKGIIK_16775 DNA helicase low > 53
Escherichia coli BL21 0.46 ECD_03687 site-specific tyrosine recombinase 0.62 ECD_03689 DNA-dependent ATPase I and helicase II — —
Erwinia tracheiphila SCR3 0.46 LU632_RS24135 xerC tyrosine recombinase XerC 0.61 LU632_RS24125 uvrD DNA helicase II — —
Erwinia tracheiphila HP pepo 2.2 0.46 IJEDHG_08780 xerC tyrosine recombinase XerC 0.61 IJEDHG_08770 uvrD DNA helicase II — —
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.60 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.68 9
Klebsiella pneumoniae MKP103 0.46 KDGMDA_09700 tyrosine recombinase XerC 0.61 KDGMDA_09710 DNA helicase II 0.31 10
Pantoea agglomerans CFBP13505 P0401 0.46 PagCFBP13505_RS15380 tyrosine recombinase XerC 0.61 PagCFBP13505_RS15370 DNA helicase II — —
Rahnella sp. WP5 0.46 EX31_RS15165 tyrosine recombinase XerC 0.60 EX31_RS15175 DNA helicase II 0.62 12
Escherichia coli ECRC100 0.46 OKFHMN_14420 xerC tyrosine recombinase XerC 0.62 OKFHMN_14410 uvrD DNA helicase II low > 79
Escherichia coli ECRC102 0.46 NIAGMN_12175 xerC tyrosine recombinase XerC 0.62 NIAGMN_12165 uvrD DNA helicase II — —
Escherichia coli ECRC98 0.46 JDDGAC_18045 xerC tyrosine recombinase XerC 0.62 JDDGAC_18035 uvrD DNA helicase II — —
Escherichia coli ECRC99 0.46 KEDOAH_13730 xerC tyrosine recombinase XerC 0.62 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli ECRC101 0.46 MCAODC_04925 xerC tyrosine recombinase XerC 0.62 MCAODC_04915 uvrD DNA helicase II — —
Klebsiella michiganensis M5al 0.46 BWI76_RS01210 tyrosine recombinase XerC 0.62 BWI76_RS01220 DNA-dependent helicase II low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF239 Tyrosine recombinase XerC 0.62 GFF241 ATP-dependent DNA helicase UvrD/PcrA — —
Dechlorosoma suillum PS 0.45 Dsui_0651 tyrosine recombinase XerC 0.45 Dsui_1227 DNA/RNA helicase, superfamily I 0.35 10
Enterobacter asburiae PDN3 0.45 EX28DRAFT_4480 tyrosine recombinase XerC 0.62 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) — —
Lysobacter sp. OAE881 0.45 ABIE51_RS03035 tyrosine recombinase XerC 0.55 ABIE51_RS01985 DNA helicase II 0.83 2
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.847.1 Site-specific tyrosine recombinase 0.52 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA — —
Rhodanobacter denitrificans MT42 0.45 LRK55_RS08300 tyrosine recombinase XerC 0.52 LRK55_RS06595 DNA helicase II — —
Dickeya dadantii 3937 0.45 DDA3937_RS19890 tyrosine recombinase XerC 0.62 DDA3937_RS19880 DNA helicase II — —
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS08535 tyrosine recombinase XerC 0.52 LRK54_RS06850 DNA helicase II low > 59
Dickeya dianthicola ME23 0.44 DZA65_RS21090 tyrosine recombinase XerC 0.62 DZA65_RS21080 DNA helicase II low > 75
Dickeya dianthicola 67-19 0.44 HGI48_RS20045 tyrosine recombinase XerC 0.61 HGI48_RS20035 DNA helicase II low > 71
Shewanella loihica PV-4 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) 0.59 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) low > 60
Shewanella amazonensis SB2B 0.44 Sama_3247 integrase/recombinase XerC (RefSeq) 0.59 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.39 6
Enterobacter sp. TBS_079 0.43 MPMX20_04465 Tyrosine recombinase XerC 0.62 MPMX20_04463 DNA helicase II 0.44 9
Alteromonas macleodii MIT1002 0.42 MIT1002_00157 Tyrosine recombinase XerC 0.60 MIT1002_00153 DNA helicase II low > 70
Shewanella sp. ANA-3 0.41 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.60 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_00650 tyrosine recombinase XerC 0.60 CSW01_01015 DNA helicase II 0.78 6
Shewanella oneidensis MR-1 0.41 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.60 SO0467 uvrD DNA helicase II (NCBI ptt file) low > 76
Ralstonia solanacearum PSI07 0.40 RPSI07_RS23690 tyrosine recombinase XerC 0.44 RPSI07_RS13455 DNA-dependent helicase — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS21475 recombinase XerC 0.44 HSERO_RS02160 DNA-dependent helicase low > 78
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS05065 tyrosine recombinase XerC 0.44 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Ralstonia solanacearum UW163 0.39 UW163_RS03905 tyrosine recombinase XerC 0.44 UW163_RS09895 DNA-dependent helicase — —
Castellaniella sp019104865 MT123 0.39 ABCV34_RS13455 tyrosine recombinase XerC 0.41 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS00615 recombinase XerC 0.44 RR42_RS15090 DNA helicase low > 128
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS09675 tyrosine recombinase XerC 0.44 RALBFv3_RS03775 DNA-dependent helicase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF547 Tyrosine recombinase XerC 0.43 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Variovorax sp. SCN45 0.38 GFF4490 Site-specific tyrosine recombinase XerC 0.43 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Acidovorax sp. GW101-3H11 0.38 Ac3H11_1995 Tyrosine recombinase XerC 0.42 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA low > 79
Ralstonia solanacearum GMI1000 0.38 RS_RS00260 Tyrosine recombinase XerC 1 0.44 RS_RS11220 DNA-dependent helicase low > 80
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS00355 tyrosine recombinase XerC 0.45 QEN71_RS05110 3'-5' exonuclease — —
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_02202 integrase/recombinase XerC 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS01655 tyrosine recombinase XerC 0.44 BPHYT_RS13840 DNA-dependent helicase — —
Paraburkholderia graminis OAS925 0.37 ABIE53_000426 integrase/recombinase XerC 0.43 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Variovorax sp. OAS795 0.36 ABID97_RS06150 tyrosine recombinase XerC 0.44 ABID97_RS09150 UvrD-helicase domain-containing protein low > 91
Bifidobacterium breve UCC2003 0.34 BBR_RS16755 site-specific tyrosine recombinase XerD 0.31 BBR_RS14985 ATP-dependent DNA helicase PcrA low > 34
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS17800 tyrosine-type recombinase/integrase 0.32 ABZR88_RS07840 ATP-dependent helicase — —
Mycobacterium tuberculosis H37Rv 0.31 Rv1701 Probable integrase/recombinase 0.34 Rv0949 Probable ATP-dependent DNA helicase II UvrD1 low > 58
Bosea sp. OAE506 0.29 ABIE41_RS07870 tyrosine recombinase XerC 0.35 ABIE41_RS12730 UvrD-helicase domain-containing protein 0.34 68
Rhodopseudomonas palustris CGA009 0.29 TX73_000945 tyrosine recombinase XerC 0.34 TX73_018165 UvrD-helicase domain-containing protein low > 86
Rhodospirillum rubrum S1H 0.29 Rru_A1220 Phage integrase (NCBI) 0.34 Rru_A1536 UvrD/REP helicase (NCBI) — —
Rhizobium sp. OAE497 0.28 ABIE40_RS17950 tyrosine recombinase XerC 0.34 ABIE40_RS11670 UvrD-helicase domain-containing protein low > 107
Magnetospirillum magneticum AMB-1 0.28 AMB_RS21485 tyrosine recombinase XerC 0.33 AMB_RS03725 DNA helicase II — —
Azospirillum brasilense Sp245 0.27 AZOBR_RS03965 tyrosine recombinase XerC 0.35 AZOBR_RS12445 DNA helicase II — —
Phaeobacter inhibens DSM 17395 0.27 PGA1_c05760 putative tyrosine recombinase XerC 0.34 PGA1_c09450 DNA helicase II UvrD 0.36 18
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS12210 tyrosine recombinase XerC 0.33 A4249_RS04960 UvrD-helicase domain-containing protein low > 48
Azospirillum sp. SherDot2 0.26 MPMX19_02110 Tyrosine recombinase XerC 0.35 MPMX19_01610 ATP-dependent DNA helicase PcrA — —
Sphingobium sp. HT1-2 0.26 GFF251 Site-specific tyrosine recombinase XerC 0.36 GFF1640 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 95
Caulobacter crescentus NA1000 Δfur 0.26 CCNA_00349 integrase/recombinase, XerC-CodV family 0.35 CCNA_01596 DNA helicase II low > 67
Caulobacter crescentus NA1000 0.26 CCNA_00349 integrase/recombinase, XerC-CodV family 0.35 CCNA_01596 DNA helicase II 0.51 20
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_2764 Site-specific recombinase XerD 0.35 Ga0059261_0249 Superfamily I DNA and RNA helicases low > 68
Fusobacterium nucleatum SB010 0.14 HUW76_06795 tyrosine-type recombinase/integrase 0.30 HUW76_07175 UvrD-helicase domain-containing protein low > 35

Not shown: 7 genomes with orthologs for Psyr_0185 only; 13 genomes with orthologs for Psyr_5065 only