Conservation of cofitness between Psyr_4683 and Psyr_4932 in Pseudomonas syringae pv. syringae B728a

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4683 dethiobiotin synthase 1.0 Psyr_4932 agmatine deiminase 0.51 17
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4683 dethiobiotin synthase 1.00 Psyr_4932 agmatine deiminase low > 86
Pseudomonas simiae WCS417 0.83 PS417_25985 dethiobiotin synthetase 0.89 PS417_01340 agmatine deiminase low > 88
Pseudomonas fluorescens SBW25 0.82 PFLU_RS27630 dethiobiotin synthase 0.89 PFLU_RS01435 agmatine deiminase low > 109
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS27630 dethiobiotin synthase 0.89 PFLU_RS01435 agmatine deiminase low > 109
Pseudomonas fluorescens FW300-N2E3 0.81 AO353_07505 dethiobiotin synthetase 0.88 AO353_11915 agmatine deiminase low > 101
Pseudomonas orientalis W4I3 0.81 QF045_RS00395 dethiobiotin synthase 0.89 QF045_RS04460 agmatine deiminase low > 93
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_1151 Dethiobiotin synthetase (EC 6.3.3.3) 0.88 PfGW456L13_397 Agmatine deiminase (EC 3.5.3.12) low > 87
Pseudomonas lactucae CFBP13502 0.81 GEMAOFIL_05318 ATP-dependent dethiobiotin synthetase BioD 1 0.89 GEMAOFIL_00490 Agmatine deiminase low > 96
Pseudomonas sp. DMC3 0.80 GFF72 ATP-dependent dethiobiotin synthetase BioD 1 0.89 GFF4153 Agmatine deiminase low > 89
Pseudomonas fluorescens FW300-N1B4 0.80 Pf1N1B4_2491 Dethiobiotin synthetase (EC 6.3.3.3) 0.88 Pf1N1B4_1661 Agmatine deiminase (EC 3.5.3.12) low > 87
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_14155 dethiobiotin synthetase 0.89 AO356_10030 Agmatine deiminase (EC 3.5.3.12) (from data) low > 104
Pseudomonas fluorescens FW300-N2E2 0.80 Pf6N2E2_4764 Dethiobiotin synthetase (EC 6.3.3.3) 0.89 Pf6N2E2_3876 Agmatine deiminase (EC 3.5.3.12) low > 103
Pseudomonas sp. RS175 0.79 PFR28_04099 ATP-dependent dethiobiotin synthetase BioD 1 0.88 PFR28_04897 Agmatine deiminase — —
Pseudomonas sp. SVBP6 0.77 COO64_RS22705 bioD dethiobiotin synthase 0.87 COO64_RS00555 aguA agmatine deiminase low > 93
Pseudomonas segetis P6 0.74 ACVTMO_RS03780 bioD dethiobiotin synthase 0.80 ACVTMO_RS02630 aguA agmatine deiminase 0.60 51
Pseudomonas sp. BP01 0.73 JOY50_RS17950 bioD dethiobiotin synthase 0.86 JOY50_RS26405 aguA agmatine deiminase low > 84
Pseudomonas putida KT2440 0.72 PP_0366 dethiobiotin synthetase 0.87 PP_0266 Agmatine deiminase low > 96
Pseudomonas sp. S08-1 0.72 OH686_10335 dethiobiotin synthase 0.80 OH686_11505 agmatine deiminase low > 80
Pseudomonas stutzeri RCH2 0.65 Psest_0415 dethiobiotin synthase 0.74 Psest_4291 agmatine deiminase low > 67
Pseudomonas aeruginosa MRSN321 0.64 DY961_RS22525 bioD;go_function=dethiobiotin dethiobiotin synthase 0.76 DY961_RS21405 aguA;go_component=cytoplasm|0005737||IEA;go_function=agmatine agmatine deiminase — —
Pseudomonas aeruginosa PUPa3 0.64 DQ20_RS36805 bioD;go_function=dethiobiotin dethiobiotin synthase 0.76 DQ20_RS37885 aguA;go_component=cytoplasm|0005737||IEA;go_function=agmatine agmatine deiminase — —
Pseudomonas aeruginosa PA14 0.64 IKLFDK_22915 dethiobiotin synthase 0.76 IKLFDK_24000 agmatine deiminase low > 98
Shewanella sp. ANA-3 0.53 Shewana3_2516 bioD dithiobiotin synthetase (RefSeq) 0.54 Shewana3_3465 agmatine deiminase (RefSeq) — —
Shewanella oneidensis MR-1 0.52 SO2737 bioD dethiobiotin synthase (NCBI ptt file) 0.54 SO_0887 agmatine deiminase (RefSeq) — —
Marinobacter adhaerens HP15 0.49 HP15_2482 dethiobiotin synthetase 0.21 HP15_2073 peptidyl-arginine deiminase family protein low > 73
Dickeya dianthicola ME23 0.49 DZA65_RS08980 ATP-dependent dethiobiotin synthetase BioD 0.53 DZA65_RS21565 agmatine deiminase low > 75
Dickeya dianthicola 67-19 0.49 HGI48_RS08690 ATP-dependent dethiobiotin synthetase BioD 0.52 HGI48_RS20520 agmatine deiminase low > 71
Serratia liquefaciens MT49 0.48 IAI46_06540 ATP-dependent dethiobiotin synthetase BioD 0.22 IAI46_12735 agmatine deiminase family protein low > 87
Dickeya dadantii 3937 0.48 DDA3937_RS08525 ATP-dependent dethiobiotin synthetase BioD 0.51 DDA3937_RS00855 agmatine deiminase low > 74
Pectobacterium carotovorum WPP14 0.48 HER17_RS13445 dethiobiotin synthase 0.54 HER17_RS00785 agmatine deiminase low > 75
Shewanella amazonensis SB2B 0.44 Sama_1441 bioD dithiobiotin synthetase (RefSeq) 0.55 Sama_2521 agmatine deiminase (RefSeq) — —
Rahnella sp. WP5 0.44 EX31_RS23710 ATP-dependent dethiobiotin synthetase BioD 0.50 EX31_RS21180 agmatine deiminase low > 89
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS12700 dethiobiotin synthase 0.25 ABZR86_RS02780 agmatine/peptidylarginine deiminase — —
Lysobacter sp. OAE881 0.43 ABIE51_RS17990 dethiobiotin synthase 0.25 ABIE51_RS09325 agmatine deiminase family protein — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_16455 bioD dethiobiotin synthase 0.23 OKGIIK_06975 Agmatine deiminase — —
Rhodanobacter sp000427505 FW510-R12 0.42 LRK53_RS01195 dethiobiotin synthase 0.23 LRK53_RS09815 agmatine deiminase family protein — —
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS07180 dethiobiotin synthase 0.23 LRK54_RS00335 agmatine deiminase family protein — —
Rhodanobacter denitrificans MT42 0.41 LRK55_RS06915 dethiobiotin synthase 0.23 LRK55_RS00025 agmatine deiminase family protein — —
Alteromonas macleodii MIT1002 0.41 MIT1002_01382 ATP-dependent dethiobiotin synthetase BioD 1 0.15 MIT1002_03760 Putative agmatine deiminase low > 70
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_0869 dethiobiotin synthase 0.27 B158DRAFT_1812 Peptidylarginine deiminase and related enzymes — —
Variovorax sp. SCN45 0.36 GFF143 Dethiobiotin synthase BioD (EC 6.3.3.3) 0.25 GFF36 Similar to Agmatine deiminase low > 127
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.4530.1 Dethiobiotin synthetase (EC 6.3.3.3) 0.23 Xcc-8004.2375.1 Agmatine deiminase (EC 3.5.3.12) — —
Phocaeicola vulgatus CL09T03C04 0.19 HMPREF1058_RS17975 ATP-dependent dethiobiotin synthetase BioD 0.20 HMPREF1058_RS04370 agmatine deiminase family protein low > 67
Phocaeicola dorei CL03T12C01 0.19 ABI39_RS14265 ATP-dependent dethiobiotin synthetase BioD 0.20 ABI39_RS16700 agmatine deiminase family protein low > 72
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS09760 dethiobiotin synthase 0.29 CA265_RS15455 agmatine deiminase — —
Synechococcus elongatus PCC 7942 0.17 Synpcc7942_0030 bioD dethiobiotin synthase 0.23 Synpcc7942_2402 hypothetical protein — —
Sphingobium sp. HT1-2 0.17 GFF3209 Dethiobiotin synthase BioD (EC 6.3.3.3) 0.25 GFF3890 Agmatine deiminase (EC 3.5.3.12) low > 95
Phaeobacter inhibens DSM 17395 0.16 PGA1_c09140 dethiobiotin synthetase BioD 0.19 PGA1_c26490 putative agmatine deiminase low > 62
Sphingomonas koreensis DSMZ 15582 0.15 Ga0059261_3673 dethiobiotin synthase 0.20 Ga0059261_1981 Peptidylarginine deiminase and related enzymes — —

Not shown: 50 genomes with orthologs for Psyr_4683 only; 11 genomes with orthologs for Psyr_4932 only