Conservation of cofitness between Psyr_4404 and Psyr_4275 in Pseudomonas syringae pv. syringae B728a

111 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4404 tRNA-U20-dihydrouridine synthase 1.0 Psyr_4275 DNA replication and repair protein RadA 0.40 10
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4404 tRNA-U20-dihydrouridine synthase 1.00 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas simiae WCS417 0.87 PS417_02950 tRNA-dihydrouridine synthase B 0.96 PS417_24305 DNA repair protein RadA low > 88
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.96 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens SBW25 0.87 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.96 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_13660 tRNA-dihydrouridine synthase B 0.96 AO353_13980 DNA repair protein RadA low > 101
Pseudomonas sp. DMC3 0.85 GFF3310 tRNA-dihydrouridine synthase B 0.96 GFF3954 DNA repair protein RadA low > 89
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.97 Pf1N1B4_2768 DNA repair protein RadA low > 87
Pseudomonas lactucae CFBP13502 0.85 GEMAOFIL_00822 tRNA-dihydrouridine synthase B 0.96 GEMAOFIL_05014 DNA repair protein RadA low > 93
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.96 PfGW456L13_1442 DNA repair protein RadA low > 87
Pseudomonas sp. RS175 0.84 PFR28_05216 tRNA-dihydrouridine synthase B 0.96 PFR28_03792 DNA repair protein RadA low > 88
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.97 Pf6N2E2_5076 DNA repair protein RadA low > 103
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_08215 tRNA-dihydrouridine synthase B 0.97 AO356_15680 DNA repair protein RadA low > 104
Pseudomonas sp. SVBP6 0.83 COO64_RS18315 dusB tRNA dihydrouridine synthase DusB 0.95 COO64_RS02920 radA DNA repair protein RadA low > 93
Pseudomonas sp. BP01 0.81 JOY50_RS17635 dusB tRNA dihydrouridine synthase DusB 0.94 JOY50_RS15685 radA DNA repair protein RadA low > 84
Pseudomonas sp. S08-1 0.81 OH686_07610 tRNA-dihydrouridine synthase DusB 0.93 OH686_16185 DNA repair protein RadA low > 80
Pseudomonas stutzeri RCH2 0.81 Psest_1016 putative TIM-barrel protein, nifR3 family 0.92 Psest_3401 DNA repair protein RadA low > 67
Pseudomonas putida KT2440 0.81 PP_4820 tRNA-dihydrouridine synthase B 0.94 PP_4644 DNA repair enzyme low > 96
Pseudomonas segetis P6 0.80 MPMX49_04106 tRNA-dihydrouridine synthase B 0.92 MPMX49_03982 DNA repair protein RadA low > 75
Pseudomonas aeruginosa PA14 0.77 IKLFDK_29300 tRNA dihydrouridine synthase DusB 0.91 IKLFDK_00465 DNA repair protein RadA low > 100
Marinobacter adhaerens HP15 0.69 HP15_3225 tRNA-dihydrouridine synthase B 0.62 HP15_487 DNA repair protein RadA low > 73
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_0164 tRNA-U20-dihydrouridine synthase 0.67 B158DRAFT_0877 DNA replication and repair protein RadA low > 40
Dechlorosoma suillum PS 0.62 Dsui_1593 putative TIM-barrel protein, nifR3 family 0.58 Dsui_2413 DNA repair protein RadA low > 51
Ralstonia solanacearum PSI07 0.61 RPSI07_RS21520 tRNA dihydrouridine synthase DusB 0.58 RPSI07_RS17270 DNA repair protein RadA low > 81
Ralstonia solanacearum GMI1000 0.61 RS_RS02515 tRNA dihydrouridine synthase DusB 0.58 RS_RS06880 DNA repair protein RadA low > 80
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS07650 tRNA dihydrouridine synthase DusB 0.59 ABZR87_RS11670 DNA repair protein RadA low > 80
Alteromonas macleodii MIT1002 0.61 MIT1002_03957 putative tRNA-dihydrouridine synthase 0.67 MIT1002_02706 Lon protease 2 low > 70
Herbaspirillum seropedicae SmR1 0.61 HSERO_RS02050 tRNA-dihydrouridine synthase B 0.59 HSERO_RS10745 DNA repair protein RadA low > 78
Ralstonia solanacearum UW163 0.60 UW163_RS01890 tRNA dihydrouridine synthase DusB 0.59 UW163_RS13540 DNA repair protein RadA
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS11695 tRNA dihydrouridine synthase DusB 0.59 RALBFv3_RS00210 DNA repair protein RadA low > 76
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS26770 tRNA dihydrouridine synthase DusB 0.60 QEN71_RS06320 DNA repair protein RadA low > 153
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_04249 tRNA-U20-dihydrouridine synthase 0.60 H281DRAFT_00590 DNA replication and repair protein RadA low > 103
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS02730 tRNA-dihydrouridine synthase B 0.59 RR42_RS12030 DNA repair protein RadA
Lysobacter sp. OAE881 0.59 ABIE51_RS16450 tRNA dihydrouridine synthase DusB 0.61 ABIE51_RS07685 DNA repair protein RadA low > 62
Methylophilus sp. DMC18 0.58 GFF1646 tRNA-dihydrouridine synthase B 0.61 GFF1046 DNA repair protein RadA low > 43
Paraburkholderia graminis OAS925 0.58 ABIE53_003489 tRNA-dihydrouridine synthase B 0.60 ABIE53_002526 DNA repair protein RadA/Sms low > 113
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS11525 tRNA dihydrouridine synthase DusB 0.62 ABZR86_RS08845 DNA repair protein RadA low > 74
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS12140 tRNA dihydrouridine synthase DusB 0.63 LRK54_RS02525 DNA repair protein RadA low > 59
Rhodanobacter denitrificans MT42 0.58 LRK55_RS11875 tRNA dihydrouridine synthase DusB 0.63 LRK55_RS02280 DNA repair protein RadA low > 63
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS16585 tRNA-dihydrouridine synthase B 0.60 BPHYT_RS12235 DNA repair protein RadA low > 109
Rhodanobacter sp. FW510-T8 0.58 OKGIIK_11770 dusB tRNA dihydrouridine synthase DusB 0.63 OKGIIK_09580 radA DNA repair protein RadA low > 53
Erwinia amylovora T8 0.57 OLJFJH_06855 tRNA dihydrouridine synthase DusB 0.63 OLJFJH_01590 DNA repair protein RadA low > 58
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_01495 tRNA dihydrouridine synthase DusB 0.61 CSW01_11870 DNA repair protein RadA low > 62
Rhodanobacter sp000427505 FW510-R12 0.56 LRK53_RS16445 tRNA dihydrouridine synthase DusB 0.64 LRK53_RS07420 DNA repair protein RadA 0.37 56
Shewanella amazonensis SB2B 0.56 Sama_3225 tRNA-dihydrouridine synthase B (RefSeq) 0.61 Sama_0981 DNA repair protein RadA (RefSeq) low > 62
Rahnella sp. WP5 0.56 EX31_RS12180 tRNA dihydrouridine synthase DusB 0.63 EX31_RS04030 DNA repair protein RadA low > 89
Escherichia coli ECOR38 0.56 HEPCGN_16505 dusB tRNA dihydrouridine synthase DusB 0.65 HEPCGN_09195 radA DNA repair protein RadA low > 88
Escherichia coli ECRC101 0.56 MCAODC_08205 dusB tRNA dihydrouridine synthase DusB 0.65 MCAODC_01710 radA DNA repair protein RadA low > 88
Variovorax sp. OAS795 0.56 ABID97_RS24735 tRNA dihydrouridine synthase DusB 0.59 ABID97_RS03770 DNA repair protein RadA low > 91
Escherichia fergusonii Becca 0.56 EFB2_00564 tRNA-dihydrouridine synthase B 0.65 EFB2_04057 DNA repair protein RadA low > 86
Escherichia coli ECOR27 0.56 NOLOHH_09470 dusB tRNA dihydrouridine synthase DusB 0.65 NOLOHH_03520 radA DNA repair protein RadA low > 76
Dickeya dadantii 3937 0.56 DDA3937_RS01375 tRNA dihydrouridine synthase DusB 0.61 DDA3937_RS02420 DNA repair protein RadA low > 74
Escherichia coli BL21 0.56 ECD_03118 tRNA-dihydrouridine synthase B 0.65 ECD_04265 DNA repair protein low > 61
Escherichia coli Nissle 1917 0.56 ECOLIN_RS18725 tRNA dihydrouridine synthase DusB 0.65 ECOLIN_RS25190 DNA repair protein RadA low > 55
Escherichia coli ECRC102 0.56 NIAGMN_15445 dusB tRNA dihydrouridine synthase DusB 0.65 NIAGMN_09045 radA DNA repair protein RadA low > 80
Escherichia coli ECRC62 0.56 BNILDI_02050 dusB tRNA dihydrouridine synthase DusB 0.65 BNILDI_08075 radA DNA repair protein RadA low > 75
Escherichia coli ECRC100 0.56 OKFHMN_17685 dusB tRNA dihydrouridine synthase DusB 0.65 OKFHMN_11195 radA DNA repair protein RadA low > 79
Escherichia coli BW25113 0.56 b3260 dusB tRNA-dihydrouridine synthase B (NCBI) 0.65 b4389 radA predicted repair protein (NCBI) low > 76
Enterobacter sp. TBS_079 0.56 MPMX20_04169 tRNA-dihydrouridine synthase B 0.64 MPMX20_00694 DNA repair protein RadA low > 85
Dickeya dianthicola 67-19 0.56 HGI48_RS01295 tRNA dihydrouridine synthase DusB 0.61 HGI48_RS02380 DNA repair protein RadA low > 71
Klebsiella michiganensis M5al 0.56 BWI76_RS25565 tRNA dihydrouridine synthase DusB 0.64 BWI76_RS04165 DNA repair protein RadA
Dickeya dianthicola ME23 0.55 DZA65_RS01355 tRNA dihydrouridine synthase DusB 0.61 DZA65_RS02485 DNA repair protein RadA low > 75
Erwinia tracheiphila HP pepo 2.2 0.55 IJEDHG_13500 dusB tRNA dihydrouridine synthase DusB 0.63 IJEDHG_06365 radA DNA repair protein RadA low > 61
Castellaniella sp019104865 MT123 0.55 ABCV34_RS07960 tRNA dihydrouridine synthase DusB 0.57 ABCV34_RS02345 DNA repair protein RadA low > 48
Variovorax sp. SCN45 0.55 GFF2144 tRNA-dihydrouridine synthase DusB 0.59 GFF5087 DNA repair protein RadA low > 127
Klebsiella pneumoniae MKP103 0.55 KDGMDA_06325 tRNA dihydrouridine synthase DusB 0.64 KDGMDA_12435 DNA repair protein RadA low > 95
Shewanella oneidensis MR-1 0.55 SO0394 conserved hypothetical protein (NCBI ptt file) 0.64 SO1226 radA DNA repair protein RadA (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.55 HER17_RS20235 tRNA dihydrouridine synthase DusB 0.62 HER17_RS19085 DNA repair protein RadA low > 75
Serratia liquefaciens MT49 0.55 IAI46_22775 tRNA dihydrouridine synthase DusB 0.64 IAI46_02945 DNA repair protein RadA low > 86
Shewanella sp. ANA-3 0.54 Shewana3_0399 nifR3 family TIM-barrel protein (RefSeq) 0.64 Shewana3_1049 DNA repair protein RadA (RefSeq) low > 73
Enterobacter asburiae PDN3 0.54 EX28DRAFT_3313 putative TIM-barrel protein, nifR3 family 0.64 EX28DRAFT_3597 DNA repair protein RadA low > 76
Shewanella loihica PV-4 0.54 Shew_0330 nifR3 family TIM-barrel protein (RefSeq) 0.38 Shew_2807 DNA repair protein RadA (RefSeq) low > 60
Pantoea agglomerans CFBP13505 P0401 0.53 PagCFBP13505_RS10980 tRNA dihydrouridine synthase DusB 0.63 PagCFBP13505_RS21755 DNA repair protein RadA low > 74
Pantoea sp. MT58 0.53 IAI47_02385 tRNA dihydrouridine synthase DusB 0.63 IAI47_16345 DNA repair protein RadA low > 76
Acinetobacter radioresistens SK82 0.53 MPMX26_02127 tRNA-dihydrouridine synthase B 0.66 MPMX26_02235 DNA repair protein RadA low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF634 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.56 GFF1833 DNA repair protein RadA low > 90
Acinetobacter baumannii LAC-4 0.52 RR41_RS04995 tRNA dihydrouridine synthase DusB 0.67 RR41_RS04415 DNA repair protein RadA low > 55
Acidovorax sp. GW101-3H11 0.52 Ac3H11_3996 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.57 Ac3H11_3371 DNA repair protein RadA low > 79
Escherichia coli ECRC99 0.50 KEDOAH_10465 dusB tRNA dihydrouridine synthase DusB 0.65 KEDOAH_16960 radA DNA repair protein RadA
Escherichia coli ECRC98 0.50 JDDGAC_21310 dusB tRNA dihydrouridine synthase DusB 0.65 JDDGAC_14790 radA DNA repair protein RadA low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00445 putative tRNA-dihydrouridine synthase 0.65 OHPLBJKB_03672 DNA repair protein RadA low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF2124 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.63 GFF1057 DNA repair protein RadA low > 78
Magnetospirillum magneticum AMB-1 0.48 AMB_RS11940 tRNA dihydrouridine synthase DusB 0.45 AMB_RS10555 DNA repair protein RadA low > 64
Azospirillum sp. SherDot2 0.45 MPMX19_01110 tRNA-dihydrouridine synthase B 0.45 MPMX19_00904 DNA repair protein RadA low > 112
Azospirillum brasilense Sp245 0.43 AZOBR_RS14420 tRNA-dihydrouridine synthase 0.46 AZOBR_RS08320 DNA repair protein RadA low > 97
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_0140 tRNA-U20-dihydrouridine synthase 0.42 Ga0059261_0751 DNA repair protein RadA low > 68
Sphingobium sp. HT1-2 0.38 GFF1150 tRNA-dihydrouridine synthase DusB 0.43 GFF1895 DNA repair protein RadA low > 95
Agrobacterium fabrum C58 0.37 Atu1444 nitrogen regulation protein 0.45 Atu1077 DNA repair protein low > 89
Sinorhizobium meliloti 1021 0.36 SMc01041 NIFR3-like protein 0.45 SMc00556 DNA repair protein RadA low > 103
Xanthobacter sp. DMC5 0.35 GFF850 tRNA-dihydrouridine synthase B 0.43 GFF1870 DNA repair protein RadA
Rhizobium sp. OAE497 0.35 ABIE40_RS09080 tRNA dihydrouridine synthase DusB 0.45 ABIE40_RS06280 DNA repair protein RadA low > 107
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS04810 tRNA dihydrouridine synthase DusB 0.41 A4249_RS03745 DNA repair protein RadA low > 48
Rhodospirillum rubrum S1H 0.34 Rru_A1676 Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI) 0.42 Rru_A0406 DNA repair protein RadA (NCBI) low > 58
Phaeobacter inhibens DSM 17395 0.34 PGA1_c14770 tRNA-dihydrouridine synthase DusB 0.44 PGA1_c10840 DNA repair protein RadA low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.33 CA264_17860 tRNA dihydrouridine synthase DusB 0.42 CA264_17125 DNA repair protein RadA low > 74
Dinoroseobacter shibae DFL-12 0.32 Dshi_1576 putative TIM-barrel protein, nifR3 family (RefSeq) 0.45 Dshi_2129 DNA repair protein RadA (RefSeq) low > 64
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS21125 tRNA dihydrouridine synthase DusB 0.43 CA265_RS22660 DNA repair protein RadA low > 88
Rhodopseudomonas palustris CGA009 0.32 TX73_013410 tRNA dihydrouridine synthase DusB 0.44 TX73_015980 DNA repair protein RadA low > 86
Synechocystis sp000284455 PCC 6803 0.32 SGL_RS14330 tRNA dihydrouridine synthase DusB 0.43 SGL_RS11815 DNA repair protein RadA low > 52
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS22340 tRNA dihydrouridine synthase DusB 0.43 ABZR88_RS20495 DNA repair protein RadA low > 71
Cellulophaga baltica 18 0.31 M666_RS04760 tRNA dihydrouridine synthase DusB 0.42 M666_RS03595 DNA repair protein RadA low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_1531 putative TIM-barrel protein, nifR3 family 0.44 Echvi_1031 DNA repair protein RadA low > 79
Phocaeicola dorei CL03T12C01 0.30 ABI39_RS06125 tRNA dihydrouridine synthase DusB 0.43 ABI39_RS10420 DNA repair protein RadA low > 72
Bacteroides thetaiotaomicron VPI-5482 0.30 BT3073 putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) 0.43 BT2406 putative DNA repair protein (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.30 BACOVA_02724 TIM-barrel protein, nifR3 family 0.43 BACOVA_03019 DNA repair protein RadA 0.71 9
Phocaeicola vulgatus CL09T03C04 0.30 HMPREF1058_RS10945 tRNA dihydrouridine synthase DusB 0.43 HMPREF1058_RS14715 DNA repair protein RadA low > 67
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS01530 tRNA dihydrouridine synthase DusB 0.45 HMPREF1181_RS00075 DNA repair protein RadA low > 56
Caulobacter crescentus NA1000 0.29 CCNA_01813 tRNA-dihydrouridine synthase 0.41 CCNA_01732 DNA repair protein RadA low > 66
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_01813 tRNA-dihydrouridine synthase 0.41 CCNA_01732 DNA repair protein RadA low > 67
Synechococcus elongatus PCC 7942 0.25 Synpcc7942_0283 Dihydrouridine synthase TIM-barrel protein nifR3 0.41 Synpcc7942_1452 radA DNA repair protein RadA low > 38
Fusobacterium nucleatum SB010 0.25 HUW76_04330 tRNA-dihydrouridine synthase 0.35 HUW76_02270 DNA repair protein RadA low > 35
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU0661 dihydrouridine synthase family protein (TIGR) 0.35 DVU1590 radA DNA repair protein RadA (TIGR) low > 55

Not shown: 0 genomes with orthologs for Psyr_4404 only; 7 genomes with orthologs for Psyr_4275 only