Conservation of cofitness between Psyr_3669 and Psyr_4178 in Pseudomonas syringae pv. syringae B728a

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_3669 Membrane protein involved in aromatic hydrocarbon degradation 1.0 Psyr_4178 tRNA pseudouridine synthase B 0.39 1
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_3669 Membrane protein involved in aromatic hydrocarbon degradation 1.00 Psyr_4178 tRNA pseudouridine synthase B low > 86
Pseudomonas sp. SVBP6 0.78 COO64_RS07175 OmpP1/FadL family transporter 0.91 COO64_RS15160 truB tRNA pseudouridine(55) synthase TruB low > 93
Pseudomonas putida KT2440 0.76 PP_1689 putative Long-chain fatty acid transporter 0.89 PP_4710 tRNA pseudouridine 55 synthase 0.18 16
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_24065 Long-chain fatty acid transport protein 0.93 AO353_05550 pseudouridine synthase low > 101
Pseudomonas sp. BP01 0.71 JOY50_RS28015 OmpP1/FadL family transporter 0.88 JOY50_RS26845 truB tRNA pseudouridine(55) synthase TruB low > 84
Pseudomonas fluorescens FW300-N1B4 0.70 Pf1N1B4_3720 Long-chain fatty acid transport protein 0.94 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N2E2 0.70 Pf6N2E2_830 Long-chain fatty acid transport protein 0.94 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 103
Pseudomonas fluorescens FW300-N2C3 0.70 AO356_27575 Long-chain fatty acid transport protein 0.94 AO356_07400 pseudouridine synthase low > 104
Pseudomonas sp. DMC3 0.69 GFF2561 Putative outer membrane protein 0.93 GFF4990 tRNA pseudouridine synthase B low > 89
Pseudomonas fluorescens GW456-L13 0.69 PfGW456L13_4229 Long-chain fatty acid transport protein 0.93 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 87
Pseudomonas sp. RS175 0.69 PFR28_03194 Long-chain fatty acid transport protein 0.93 PFR28_00092 tRNA pseudouridine synthase B — —
Pseudomonas segetis P6 0.68 MPMX49_01831 Outer membrane protein P1 0.85 MPMX49_01203 tRNA pseudouridine synthase B 0.54 45
Pseudomonas stutzeri RCH2 0.65 Psest_2997 Long-chain fatty acid transport protein 0.83 Psest_0983 tRNA pseudouridine 55 synthase — —
Pseudomonas fluorescens SBW25 0.61 PFLU_RS24030 fatty acid transporter membrane protein 0.93 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS24030 fatty acid transporter membrane protein 0.93 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas lactucae CFBP13502 0.61 GEMAOFIL_04196 Putative outer membrane protein 0.94 GEMAOFIL_04943 tRNA pseudouridine synthase B low > 93
Pseudomonas simiae WCS417 0.59 PS417_19995 Long-chain fatty acid transport protein 0.94 PS417_23960 pseudouridine synthase — —
Pseudomonas sp. S08-1 0.55 OH686_04915 Long-chain fatty acid transport protein 0.84 OH686_17155 tRNA pseudouridine(55) synthase low > 80
Pseudomonas aeruginosa PA14 0.51 IKLFDK_06110 Long-chain fatty acid transport protein 0.79 IKLFDK_29890 tRNA pseudouridine(55) synthase TruB low > 100
Methylophilus sp. DMC18 0.26 GFF2418 47 kDa outer membrane protein 0.50 GFF2846 tRNA pseudouridine synthase B low > 43
Azospirillum sp. SherDot2 0.26 MPMX19_00681 47 kDa outer membrane protein 0.34 MPMX19_02524 tRNA pseudouridine synthase B low > 112
Rhodospirillum rubrum S1H 0.26 Rru_A1313 Membrane protein involved in aromatic hydrocarbon degradation (NCBI) 0.28 Rru_A3783 tRNA pseudouridine synthase B (NCBI) low > 58
Alteromonas macleodii MIT1002 0.24 MIT1002_03890 Outer membrane flp protein 0.42 MIT1002_01773 tRNA pseudouridine synthase B low > 70
Dechlorosoma suillum PS 0.22 Dsui_0321 long-chain fatty acid transport protein 0.47 Dsui_2720 tRNA pseudouridine 55 synthase low > 51
Xanthomonas campestris pv. campestris strain 8004 0.21 Xcc-8004.22.1 Long-chain fatty acid transport protein 0.38 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 74
Shewanella amazonensis SB2B 0.21 Sama_0339 membrane protein involved in aromatic hydrocarbon degradation (RefSeq) 0.45 Sama_0963 pseudouridylate synthase (RefSeq) low > 62
Lysobacter sp. OAE881 0.21 ABIE51_RS19235 outer membrane protein transport protein 0.41 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB low > 62
Shewanella sp. ANA-3 0.21 Shewana3_3757 membrane protein involved in aromatic hydrocarbon degradation (RefSeq) 0.46 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) low > 73
Dickeya dianthicola ME23 0.21 DZA65_RS15505 long-chain fatty acid transporter FadL 0.47 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB low > 75
Dickeya dianthicola 67-19 0.20 HGI48_RS14565 long-chain fatty acid transporter FadL 0.48 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB low > 71
Rahnella sp. WP5 0.20 EX31_RS19720 long-chain fatty acid transporter FadL 0.47 EX31_RS08530 tRNA pseudouridine(55) synthase TruB low > 89
Erwinia amylovora T8 0.20 OLJFJH_11125 long-chain fatty acid transporter FadL 0.47 OLJFJH_07250 tRNA pseudouridine(55) synthase TruB 0.30 52
Dickeya dadantii 3937 0.20 DDA3937_RS14615 long-chain fatty acid transporter FadL 0.49 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.46 15
Escherichia coli Nissle 1917 0.20 ECOLIN_RS13565 long-chain fatty acid transporter FadL 0.50 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB low > 55
Escherichia fergusonii Becca 0.20 EFB2_01515 Long-chain fatty acid transport protein 0.50 EFB2_00657 tRNA pseudouridine synthase B low > 86
Xanthobacter sp. DMC5 0.20 GFF520 Long-chain fatty acid transport protein 0.33 GFF2293 tRNA pseudouridine synthase B — —
Serratia liquefaciens MT49 0.20 IAI46_18060 long-chain fatty acid transporter FadL 0.49 IAI46_01945 tRNA pseudouridine(55) synthase TruB low > 86
Sphingobium sp. HT1-2 0.20 GFF4180 long chain fatty acid transport protein 0.26 GFF2345 tRNA pseudouridine(55) synthase (EC 5.4.99.25) low > 95
Pantoea agglomerans CFBP13505 P0401 0.20 PagCFBP13505_RS00070 long-chain fatty acid transporter FadL 0.49 PagCFBP13505_RS09110 tRNA pseudouridine(55) synthase TruB low > 74
Klebsiella pneumoniae MKP103 0.19 KDGMDA_27305 long-chain fatty acid transporter FadL 0.49 KDGMDA_05890 tRNA pseudouridine(55) synthase TruB low > 95
Dyella japonica UNC79MFTsu3.2 0.19 ABZR86_RS12985 outer membrane protein transport protein 0.36 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB low > 74
Enterobacter asburiae PDN3 0.19 EX28DRAFT_0268 Long-chain fatty acid transport protein 0.49 EX28DRAFT_3217 tRNA pseudouridine(55) synthase low > 76
Marinobacter adhaerens HP15 0.19 HP15_291 membrane protein involved in aromatic hydrocarbon degradation 0.44 HP15_3065 tRNA pseudouridine synthase B low > 73
Enterobacter sp. TBS_079 0.19 MPMX20_03271 Long-chain fatty acid transport protein 0.50 MPMX20_04071 tRNA pseudouridine synthase B 0.26 6
Pectobacterium carotovorum WPP14 0.19 HER17_RS06875 long-chain fatty acid transporter FadL 0.48 HER17_RS18200 tRNA pseudouridine(55) synthase TruB low > 75
Erwinia tracheiphila SCR3 0.19 LU632_RS07305 fadL long-chain fatty acid transporter FadL 0.47 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB low > 74
Shewanella loihica PV-4 0.19 Shew_3468 membrane protein involved in aromatic hydrocarbon degradation (RefSeq) 0.45 Shew_2825 tRNA pseudouridine synthase B (RefSeq) low > 60
Pantoea sp. MT58 0.19 IAI47_06115 long-chain fatty acid transporter FadL 0.50 IAI47_17015 tRNA pseudouridine(55) synthase TruB low > 76
Erwinia tracheiphila HP pepo 2.2 0.18 IJEDHG_17780 fadL long-chain fatty acid transporter FadL 0.47 IJEDHG_13945 truB tRNA pseudouridine(55) synthase TruB low > 61
Escherichia coli BW25113 0.18 b2344 fadL long-chain fatty acid outer membrane transporter (RefSeq) 0.50 b3166 truB tRNA pseudouridine synthase B (NCBI) low > 76
Vibrio cholerae E7946 ATCC 55056 0.18 CSW01_18440 long-chain fatty acid transporter 0.47 CSW01_03400 tRNA pseudouridine(55) synthase TruB low > 62
Escherichia coli BL21 0.18 ECD_02268 long-chain fatty acid outer membrane transporter 0.50 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase low > 61
Escherichia coli ECRC62 0.18 BNILDI_13095 fadL long-chain fatty acid transporter FadL 0.49 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB low > 75
Escherichia coli ECOR27 0.18 NOLOHH_14180 fadL long-chain fatty acid transporter FadL 0.49 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB low > 76
Escherichia coli ECOR38 0.18 HEPCGN_21740 fadL long-chain fatty acid transporter FadL 0.50 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB low > 88
Caulobacter crescentus NA1000 Δfur 0.18 CCNA_02179 long-chain fatty acid transport protein precursor 0.32 CCNA_00035 tRNA pseudouridine synthase B low > 67
Caulobacter crescentus NA1000 0.18 CCNA_02179 long-chain fatty acid transport protein precursor 0.32 CCNA_00035 tRNA pseudouridine synthase B low > 66
Escherichia coli ECRC98 0.18 JDDGAC_26505 fadL long-chain fatty acid transporter FadL 0.50 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.31 46
Escherichia coli ECRC101 0.18 MCAODC_13575 fadL long-chain fatty acid transporter FadL 0.49 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.40 53
Escherichia coli ECRC100 0.18 OKFHMN_22545 fadL long-chain fatty acid transporter FadL 0.50 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB low > 79
Escherichia coli ECRC102 0.18 NIAGMN_20320 fadL long-chain fatty acid transporter FadL 0.50 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.18 OHPLBJKB_01362 Long-chain fatty acid transport protein 0.50 OHPLBJKB_00534 tRNA pseudouridine synthase B low > 74
Escherichia coli ECRC99 0.18 KEDOAH_05650 fadL long-chain fatty acid transporter FadL 0.50 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.18 GFF1957 Long-chain fatty acid transport protein 0.49 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) low > 78
Klebsiella michiganensis M5al 0.18 BWI76_RS20470 long-chain fatty acid transporter 0.49 BWI76_RS25080 tRNA pseudouridine(55) synthase low > 92
Bosea sp. OAE506 0.15 ABIE41_RS19190 outer membrane protein transport protein 0.31 ABIE41_RS04565 tRNA pseudouridine(55) synthase TruB low > 77
Brevundimonas sp. GW460-12-10-14-LB2 0.13 A4249_RS00530 outer membrane protein transport protein 0.29 A4249_RS13345 tRNA pseudouridine(55) synthase TruB low > 48
Rhodanobacter sp. FW510-T8 0.11 OKGIIK_16490 Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.40 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB low > 53

Not shown: 7 genomes with orthologs for Psyr_3669 only; 26 genomes with orthologs for Psyr_4178 only