| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_3004 | | transcriptional regulator, LysR family | 1.0 | Psyr_3607 | | transcriptional regulator, LysR family | 0.41 | 11 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_3004 | | transcriptional regulator, LysR family | 1.00 | Psyr_3607 | | transcriptional regulator, LysR family | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.46 | Pf1N1B4_127 | | FIG032225: Transcriptional regulator, LysR family | 0.84 | Pf1N1B4_5905 | | Transcriptional regulator, LysR family | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_09070 | | LysR family transcriptional regulator | 0.76 | AO356_21990 | | LysR family transcriptional regulator | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.45 | AO353_19660 | | LysR family transcriptional regulator | 0.84 | AO353_22295 | | LysR family transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.44 | PfGW456L13_2402 | | FIG032225: Transcriptional regulator, LysR family | 0.84 | PfGW456L13_3857 | | Transcriptional regulator, LysR family | low | > 87 |
| Pseudomonas sp. BP01 | 0.44 | JOY50_RS09220 | | LysR substrate-binding domain-containing protein | 0.70 | JOY50_RS04745 | | LysR family transcriptional regulator | low | > 84 |
| Pseudomonas putida KT2440 | 0.43 | PP_5249 | | Transcriptional regulator, LysR family | 0.71 | PP_3811 | | Transcriptional regulator, LysR family | low | > 96 |
| Pseudomonas segetis P6 | 0.43 | MPMX49_04472 | | HTH-type transcriptional regulator DmlR | 0.35 | MPMX49_04464 | | HTH-type transcriptional regulator DmlR | low | > 75 |
| Pseudomonas fluorescens FW300-N2E2 | 0.42 | Pf6N2E2_3697 | | Transcriptional regulator, LysR family | 0.77 | Pf6N2E2_259 | | Transcriptional regulator, LysR family | low | > 103 |
| Sphingomonas koreensis DSMZ 15582 | 0.42 | Ga0059261_3251 | | Transcriptional regulator | 0.32 | Ga0059261_0884 | | Transcriptional regulator | 0.42 | 2 |
| Pseudomonas aeruginosa PUPa3 | 0.39 | DQ20_RS59720 | | LysR substrate-binding domain-containing protein | 0.32 | DQ20_RS39125 | | LysR family transcriptional regulator | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.39 | DY961_RS18500 | | LysR substrate-binding domain-containing protein | 0.32 | DY961_RS01230 | | LysR family transcriptional regulator | low | > 100 |
| Pseudomonas aeruginosa PA14 | 0.39 | IKLFDK_11845 | | LysR family transcriptional regulator | 0.32 | IKLFDK_15970 | | LysR family transcriptional regulator | low | > 98 |
| Pseudomonas orientalis W4I3 | 0.34 | QF045_RS16895 | | LysR substrate-binding domain-containing protein | 0.79 | QF045_RS13895 | | LysR family transcriptional regulator | low | > 93 |
| Pseudomonas simiae WCS417 | 0.34 | PS417_13080 | | LysR family transcriptional regulator | 0.79 | PS417_16085 | | LysR family transcriptional regulator | — | — |
| Pseudomonas fluorescens SBW25 | 0.34 | PFLU_RS13720 | | LysR family transcriptional regulator | 0.80 | PFLU_RS18050 | | LysR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.34 | PFLU_RS13720 | | LysR family transcriptional regulator | 0.80 | PFLU_RS18050 | | LysR family transcriptional regulator | low | > 109 |
| Ralstonia sp. UNC404CL21Col | 0.34 | ABZR87_RS18790 | | LysR family transcriptional regulator | 0.35 | ABZR87_RS11615 | | LysR family transcriptional regulator | low | > 80 |
| Pseudomonas lactucae CFBP13502 | 0.34 | GEMAOFIL_03249 | | HTH-type transcriptional regulator DmlR | 0.79 | GEMAOFIL_02593 | | HTH-type transcriptional regulator DmlR | low | > 96 |
| Ralstonia solanacearum PSI07 | 0.32 | RPSI07_RS05790 | | LysR family transcriptional regulator | 0.35 | RPSI07_RS03985 | | LysR family transcriptional regulator | low | > 81 |
| Burkholderia phytofirmans PsJN | 0.32 | BPHYT_RS06950 | | LysR family transcriptional regulator | 0.49 | BPHYT_RS26820 | | LysR family transcriptional regulator | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.31 | ABIE53_001654 | | DNA-binding transcriptional LysR family regulator | 0.50 | ABIE53_005907 | | DNA-binding transcriptional LysR family regulator | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.31 | QEN71_RS23820 | | LysR family transcriptional regulator | 0.48 | QEN71_RS14890 | | LysR family transcriptional regulator | low | > 153 |
| Pseudomonas sp. DMC3 | 0.31 | GFF2693 | | HTH-type transcriptional regulator DmlR | 0.83 | GFF943 | | HTH-type transcriptional regulator DmlR | low | > 89 |
| Variovorax sp. SCN45 | 0.30 | GFF1284 | | Transcriptional regulator, LysR family | 0.34 | GFF7142 | | Transcriptional regulator, LysR family | low | > 127 |
| Pseudomonas sp. RS175 | 0.27 | PFR28_01692 | | HTH-type transcriptional regulator DmlR | 0.76 | PFR28_02643 | | HTH-type transcriptional regulator DmlR | low | > 88 |
| Sphingobium sp. HT1-2 | 0.27 | GFF3081 | | Transcriptional regulator, LysR family | 0.33 | GFF1839 | | Transcriptional regulator, LysR family | low | > 95 |
Not shown: 28 genomes with orthologs for Psyr_3004 only; 15 genomes with orthologs for Psyr_3607 only