Conservation of cofitness between Psyr_0690 and Psyr_3403 in Pseudomonas syringae pv. syringae B728a

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0690 3-hydroxyisobutyrate dehydrogenase 1.0 Psyr_3403 conserved hypothetical protein 0.36 3
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0690 3-hydroxyisobutyrate dehydrogenase 1.00 Psyr_3403 conserved hypothetical protein low > 86
Pseudomonas putida KT2440 0.81 PP_4666 3-hydroxyisobutyrate dehydrogenase 0.83 PP_2113 Ribosomal RNA large subunit methyltransferase M low > 96
Pseudomonas sp. BP01 0.80 JOY50_RS27600 mmsB 3-hydroxyisobutyrate dehydrogenase 0.82 JOY50_RS22010 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 84
Pseudomonas sp. SVBP6 0.79 COO64_RS02715 mmsB 3-hydroxyisobutyrate dehydrogenase 0.86 COO64_RS05200 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 93
Pseudomonas orientalis W4I3 0.78 QF045_RS25975 3-hydroxyisobutyrate dehydrogenase 0.88 QF045_RS10165 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 93
Pseudomonas fluorescens SBW25 0.78 PFLU_RS25535 3-hydroxyisobutyrate dehydrogenase 0.89 PFLU_RS07600 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 109
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS25535 3-hydroxyisobutyrate dehydrogenase 0.89 PFLU_RS07600 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 109
Pseudomonas lactucae CFBP13502 0.78 GEMAOFIL_04894 3-hydroxyisobutyrate dehydrogenase 0.88 GEMAOFIL_01636 Ribosomal RNA large subunit methyltransferase M low > 96
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_05985 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) 0.85 AO353_00560 23S rRNA methyltransferase low > 101
Pseudomonas fluorescens GW456-L13 0.76 PfGW456L13_5145 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) 0.84 PfGW456L13_4051 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM low > 87
Pseudomonas fluorescens FW300-N1B4 0.76 Pf1N1B4_1228 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) 0.88 Pf1N1B4_3890 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM — —
Pseudomonas fluorescens FW300-N2C3 0.76 AO356_07865 3-hydroxyisobutyrate dehydrogenase 0.90 AO356_02380 23S rRNA methyltransferase low > 104
Pseudomonas sp. RS175 0.75 PFR28_00014 3-hydroxyisobutyrate dehydrogenase 0.88 PFR28_01100 Ribosomal RNA large subunit methyltransferase M low > 88
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_3451 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) 0.89 Pf6N2E2_2300 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM low > 103
Pseudomonas sp. DMC3 0.75 GFF4926 3-hydroxyisobutyrate dehydrogenase 0.85 GFF1261 Ribosomal RNA large subunit methyltransferase M low > 89
Pseudomonas simiae WCS417 0.75 PS417_23720 3-hydroxyisobutyrate dehydrogenase 0.88 PS417_07520 23S rRNA methyltransferase — —
Pseudomonas stutzeri RCH2 0.60 Psest_2438 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data) 0.81 Psest_2520 Predicted SAM-dependent methyltransferase low > 67
Marinobacter adhaerens HP15 0.50 HP15_910 3-hydroxyisobutyrate dehydrogenase 0.39 HP15_2104 putative RNA 2'-O-ribose methyltransferase low > 73
Pseudomonas aeruginosa PUPa3 0.49 DQ20_RS41995 mmsB;go_function=3-hydroxyisobutyrate 3-hydroxyisobutyrate dehydrogenase 0.76 DQ20_RS53575 rlmM;go_function=methyltransferase 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 101
Pseudomonas segetis P6 0.49 ACVTMO_RS06835 mmsB 3-hydroxyisobutyrate dehydrogenase 0.82 ACVTMO_RS11555 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Pseudomonas aeruginosa MRSN321 0.49 DY961_RS15160 mmsB;go_function=3-hydroxyisobutyrate 3-hydroxyisobutyrate dehydrogenase 0.76 DY961_RS19450 rlmM;go_function=methyltransferase 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 100
Pseudomonas aeruginosa PA14 0.48 IKLFDK_18220 3-hydroxyisobutyrate dehydrogenase 0.76 IKLFDK_07475 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 98
Shewanella oneidensis MR-1 0.48 SO1682 mmsB 3-hydroxyisobutyrate dehydrogenase (NCBI ptt file) 0.45 SO1536 conserved hypothetical protein (NCBI ptt file) low > 76
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.3685.1 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) 0.39 Xcc-8004.4242.1 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM low > 74
Pseudomonas sp. S08-1 0.46 OH686_05885 3-hydroxyisobutyrate dehydrogenase 0.82 OH686_02095 23S rRNA (cytidine(2498)-2'-O)-methyltransferase low > 80
Shewanella sp. ANA-3 0.43 Shewana3_2766 3-hydroxyisobutyrate dehydrogenase (RefSeq) 0.46 Shewana3_2891 putative RNA 2'-O-ribose methyltransferase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.43 Sama_1380 3-hydroxyisobutyrate dehydrogenase (RefSeq) 0.43 Sama_2426 putative RNA 2'-O-ribose methyltransferase (RefSeq) low > 62
Shewanella loihica PV-4 0.43 Shew_1672 3-hydroxyisobutyrate dehydrogenase (RefSeq) 0.45 Shew_2761 putative RNA 2'-O-ribose methyltransferase (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.35 MIT1002_03327 3-hydroxyisobutyrate dehydrogenase 0.33 MIT1002_01523 Ribosomal RNA large subunit methyltransferase M low > 70
Pantoea agglomerans CFBP13505 P0401 0.29 PagCFBP13505_RS16870 2-hydroxy-3-oxopropionate reductase 0.48 PagCFBP13505_RS16935 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 74
Dickeya dadantii 3937 0.28 DDA3937_RS17035 2-hydroxy-3-oxopropionate reductase 0.45 DDA3937_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 74
Dickeya dianthicola ME23 0.28 DZA65_RS18165 2-hydroxy-3-oxopropionate reductase 0.45 DZA65_RS05400 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF2237 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) 0.47 GFF4863 'LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM' transl_table=11 low > 78
Erwinia tracheiphila HP pepo 2.2 0.28 IJEDHG_17355 garR 2-hydroxy-3-oxopropionate reductase 0.45 IJEDHG_17285 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 61
Erwinia tracheiphila SCR3 0.28 LU632_RS06330 garR 2-hydroxy-3-oxopropionate reductase 0.45 LU632_RS06265 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 73
Dickeya dianthicola 67-19 0.28 HGI48_RS17090 2-hydroxy-3-oxopropionate reductase 0.45 HGI48_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 71
Escherichia coli ECOR27 0.27 NOLOHH_06160 yihU sulfolactaldehyde 3-reductase 0.47 NOLOHH_12010 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 76
Escherichia coli ECRC62 0.27 BNILDI_05370 yihU sulfolactaldehyde 3-reductase 0.47 BNILDI_10515 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Escherichia coli BW25113 0.27 b3882 yihU predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain (NCBI) 0.47 b2806 ygdE predicted methyltransferase (NCBI) low > 76
Escherichia coli ECRC100 0.27 OKFHMN_14025 yihU sulfolactaldehyde 3-reductase 0.47 OKFHMN_20130 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 79
Escherichia coli ECRC101 0.27 MCAODC_04525 yihU sulfolactaldehyde 3-reductase 0.47 MCAODC_10655 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 87
Escherichia coli ECRC99 0.27 KEDOAH_14130 yihU sulfolactaldehyde 3-reductase 0.47 KEDOAH_08000 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Escherichia coli ECRC98 0.27 JDDGAC_17650 yihU sulfolactaldehyde 3-reductase 0.47 JDDGAC_23795 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 87
Escherichia coli ECRC102 0.27 NIAGMN_11780 yihU sulfolactaldehyde 3-reductase 0.47 NIAGMN_17900 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 80
Escherichia coli ECOR38 0.27 HEPCGN_12660 yihU sulfolactaldehyde 3-reductase 0.47 HEPCGN_19385 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 88
Escherichia coli BL21 0.27 ECD_03767 3-sulfolactaldehyde (SLA) reductase, NADH-dependent; gamma-hydroxybutyrate dehydrogenase, NADH-dependent 0.47 ECD_02657 23S rRNA C2498 2'-O-ribose methyltransferase, SAM-dependent low > 61

Not shown: 45 genomes with orthologs for Psyr_0690 only; 14 genomes with orthologs for Psyr_3403 only