Conservation of cofitness between Psyr_0168 and Psyr_0469 in Pseudomonas syringae pv. syringae B728a

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 1.0 Psyr_0469 dihydroxyacid dehydratase 0.59 20
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 1.00 Psyr_0469 dihydroxyacid dehydratase 0.52 59
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_10140 phosphoenolpyruvate carboxykinase [ATP] 0.94 AO356_13250 dihydroxy-acid dehydratase 0.43 36
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_3899 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.95 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.25 98
Pseudomonas lactucae CFBP13502 0.86 GEMAOFIL_00469 Phosphoenolpyruvate carboxykinase (ATP) 0.94 GEMAOFIL_05518 Dihydroxy-acid dehydratase low > 96
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_1779 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.95 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Pseudomonas orientalis W4I3 0.86 QF045_RS04340 phosphoenolpyruvate carboxykinase 0.94 QF045_RS01290 dihydroxy-acid dehydratase low > 93
Pseudomonas fluorescens SBW25 0.86 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.95 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.95 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas sp. RS175 0.85 PFR28_04874 Phosphoenolpyruvate carboxykinase (ATP) 0.95 PFR28_04278 Dihydroxy-acid dehydratase 0.28 52
Pseudomonas simiae WCS417 0.85 PS417_01210 hypothetical protein 0.95 PS417_26890 dihydroxy-acid dehydratase 0.29 48
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_420 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.94 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.32 81
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_11775 phosphoenolpyruvate carboxykinase [ATP] 0.95 AO353_08345 dihydroxy-acid dehydratase 0.44 37
Pseudomonas sp. DMC3 0.85 GFF4175 Phosphoenolpyruvate carboxykinase (ATP) 0.94 GFF246 Dihydroxy-acid dehydratase low > 89
Pseudomonas sp. SVBP6 0.84 COO64_RS00660 phosphoenolpyruvate carboxykinase 0.94 COO64_RS12815 ilvD dihydroxy-acid dehydratase low > 93
Pseudomonas sp. BP01 0.84 JOY50_RS18315 phosphoenolpyruvate carboxykinase 0.94 JOY50_RS20745 ilvD dihydroxy-acid dehydratase 0.53 81
Pseudomonas stutzeri RCH2 0.82 Psest_3988 phosphoenolpyruvate carboxykinase (ATP) 0.93 Psest_0234 dihydroxy-acid dehydratase — —
Pseudomonas segetis P6 0.82 ACVTMO_RS03850 phosphoenolpyruvate carboxykinase 0.92 ACVTMO_RS22070 ilvD dihydroxy-acid dehydratase low > 75
Pseudomonas aeruginosa PUPa3 0.81 DQ20_RS50285 phosphoenolpyruvate carboxykinase 0.92 DQ20_RS37560 ilvD;go_function=dihydroxy-acid dihydroxy-acid dehydratase low > 101
Pseudomonas aeruginosa PA14 0.81 IKLFDK_27515 phosphoenolpyruvate carboxykinase 0.92 IKLFDK_23670 dihydroxy-acid dehydratase 0.31 55
Pseudomonas aeruginosa MRSN321 0.81 DY961_RS11825 phosphoenolpyruvate carboxykinase 0.92 DY961_RS21735 ilvD;go_function=dihydroxy-acid dihydroxy-acid dehydratase — —
Pseudomonas sp. S08-1 0.80 OH686_11060 phosphoenolpyruvate carboxykinase (ATP) 0.92 OH686_14100 dihydroxy-acid dehydratase low > 80
Marinobacter adhaerens HP15 0.73 HP15_3498 phosphoenolpyruvate carboxykinase (ATP) 0.78 HP15_595 dihydroxy-acid dehydratase — —
Alteromonas macleodii MIT1002 0.69 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] 0.76 MIT1002_04041 Dihydroxy-acid dehydratase low > 70
Shewanella loihica PV-4 0.68 Shew_3623 phosphoenolpyruvate carboxykinase (RefSeq) 0.73 Shew_0292 dihydroxy-acid dehydratase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.68 Sama_0165 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) 0.73 Sama_3279 dihydroxy-acid dehydratase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.67 SO0162 pckA phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) 0.74 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.66 Shewana3_0147 phosphoenolpyruvate carboxykinase (RefSeq) 0.74 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) low > 73
Pontibacter actiniarum KMM 6156, DSM 19842 0.43 CA264_05270 phosphoenolpyruvate carboxykinase (ATP) 0.27 CA264_06935 dihydroxy-acid dehydratase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_2957 phosphoenolpyruvate carboxykinase (ATP) 0.29 Echvi_2055 dihydroxy-acid dehydratase — —
Pedobacter sp. GW460-11-11-14-LB5 0.43 CA265_RS23490 phosphoenolpyruvate carboxykinase (ATP) 0.26 CA265_RS15795 dihydroxy-acid dehydratase low > 88
Sphingobium sp. HT1-2 0.43 GFF3825 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.74 GFF1424 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 95
Agrobacterium fabrum C58 0.42 Atu0035 phosphoenolpyruvate carboxykinase 0.76 Atu1918 dihydroxy-acid dehydratase — —
Xanthobacter sp. DMC5 0.42 GFF4136 Phosphoenolpyruvate carboxykinase (ATP) 0.72 GFF4574 Dihydroxy-acid dehydratase — —
Dinoroseobacter shibae DFL-12 0.42 Dshi_0213 Phosphoenolpyruvate carboxykinase (ATP) (RefSeq) 0.29 Dshi_0129 dihydroxy-acid dehydratase (RefSeq) — —
Cellulophaga baltica 18 0.42 M666_RS03005 phosphoenolpyruvate carboxykinase (ATP) 0.32 M666_RS14910 dihydroxy-acid dehydratase low > 67
Rhodopseudomonas palustris CGA009 0.41 TX73_001865 phosphoenolpyruvate carboxykinase 0.75 TX73_007515 dihydroxy-acid dehydratase — —
Bosea sp. OAE506 0.41 ABIE41_RS02665 phosphoenolpyruvate carboxykinase 0.30 ABIE41_RS15690 dihydroxy-acid dehydratase — —
Sinorhizobium meliloti 1021 0.41 SMc02562 phosphoenolpyruvate carboxykinase 0.78 SMc04045 dihydroxy-acid dehydratase 0.40 44
Rhizobium sp. OAE497 0.41 ABIE40_RS19415 phosphoenolpyruvate carboxykinase 0.75 ABIE40_RS08005 dihydroxy-acid dehydratase low > 107
Phaeobacter inhibens DSM 17395 0.40 PGA1_c01140 phosphoenolpyruvate carboxykinase 0.73 PGA1_c29490 dihydroxy-acid dehydratase LivD 0.70 18
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_0913 phosphoenolpyruvate carboxykinase (ATP) 0.29 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase low > 68
Escherichia coli ECRC62 0.37 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) 0.74 BNILDI_04750 ilvD dihydroxy-acid dehydratase low > 75
Escherichia coli ECOR38 0.37 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) 0.74 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 88
Escherichia coli Nissle 1917 0.37 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) 0.74 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 55
Escherichia coli BW25113 0.37 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) 0.74 b3771 ilvD dihydroxy-acid dehydratase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) 0.74 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 74
Escherichia fergusonii Becca 0.37 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) 0.74 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Escherichia coli ECOR27 0.37 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) 0.74 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 76
Escherichia coli BL21 0.37 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] 0.74 ECD_03649 dihydroxyacid dehydratase low > 61
Escherichia coli ECRC98 0.37 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) 0.74 JDDGAC_18260 ilvD dihydroxy-acid dehydratase low > 87
Escherichia coli ECRC102 0.37 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) 0.74 NIAGMN_12395 ilvD dihydroxy-acid dehydratase low > 80
Escherichia coli ECRC101 0.37 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) 0.74 MCAODC_05145 ilvD dihydroxy-acid dehydratase low > 87
Escherichia coli ECRC99 0.37 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) 0.74 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC100 0.37 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) 0.74 OKFHMN_14640 ilvD dihydroxy-acid dehydratase low > 79
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.74 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Klebsiella michiganensis M5al 0.37 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) 0.74 BWI76_RS00975 dihydroxy-acid dehydratase low > 92
Serratia liquefaciens MT49 0.37 IAI46_10700 phosphoenolpyruvate carboxykinase (ATP) 0.71 IAI46_24345 dihydroxy-acid dehydratase low > 87
Klebsiella pneumoniae MKP103 0.37 KDGMDA_06970 phosphoenolpyruvate carboxykinase (ATP) 0.73 KDGMDA_09490 dihydroxy-acid dehydratase low > 95
Enterobacter sp. TBS_079 0.37 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) 0.73 MPMX20_04499 Dihydroxy-acid dehydratase low > 85
Enterobacter asburiae PDN3 0.37 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) 0.73 EX28DRAFT_4443 dihydroxy-acid dehydratase low > 76
Vibrio cholerae E7946 ATCC 55056 0.36 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) 0.75 CSW01_00140 dihydroxy-acid dehydratase low > 62
Erwinia amylovora T8 0.36 OLJFJH_04150 phosphoenolpyruvate carboxykinase (ATP) 0.72 OLJFJH_06230 dihydroxy-acid dehydratase low > 58
Erwinia tracheiphila HP pepo 2.2 0.36 IJEDHG_11970 pckA phosphoenolpyruvate carboxykinase (ATP) 0.71 IJEDHG_09115 ilvD dihydroxy-acid dehydratase low > 61
Dickeya dianthicola ME23 0.36 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) 0.73 DZA65_RS21335 dihydroxy-acid dehydratase low > 75
Erwinia tracheiphila SCR3 0.36 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) 0.71 LU632_RS24400 ilvD dihydroxy-acid dehydratase low > 73
Rahnella sp. WP5 0.36 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) 0.69 EX31_RS15005 dihydroxy-acid dehydratase low > 89
Dickeya dadantii 3937 0.36 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) 0.73 DDA3937_RS20155 dihydroxy-acid dehydratase low > 74
Dickeya dianthicola 67-19 0.36 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) 0.73 HGI48_RS20295 dihydroxy-acid dehydratase low > 71
Pantoea sp. MT58 0.36 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) 0.72 IAI47_01035 dihydroxy-acid dehydratase low > 76
Pectobacterium carotovorum WPP14 0.35 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) 0.74 HER17_RS01075 dihydroxy-acid dehydratase low > 75
Pantoea agglomerans CFBP13505 P0401 0.35 PagCFBP13505_RS18350 phosphoenolpyruvate carboxykinase (ATP) 0.72 PagCFBP13505_RS20930 dihydroxy-acid dehydratase low > 74
Phocaeicola dorei CL03T12C01 0.35 ABI39_RS06685 phosphoenolpyruvate carboxykinase (ATP) 0.63 ABI39_RS12715 dihydroxy-acid dehydratase — —
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS10065 phosphoenolpyruvate carboxykinase (ATP) 0.62 HMPREF1058_RS16815 dihydroxy-acid dehydratase — —
Parabacteroides merdae CL09T00C40 0.34 HMPREF1078_RS07235 phosphoenolpyruvate carboxykinase (ATP) 0.63 HMPREF1078_RS16695 dihydroxy-acid dehydratase — —
Bacteroides thetaiotaomicron VPI-5482 0.34 BT2790 phosphoenolpyruvate carboxykinase [ATP] (NCBI ptt file) 0.61 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS01170 phosphoenolpyruvate carboxykinase (ATP) 0.62 HMPREF1181_RS08335 dihydroxy-acid dehydratase — —
Bacteroides ovatus ATCC 8483 0.33 BACOVA_02011 phosphoenolpyruvate carboxykinase (ATP) 0.60 BACOVA_03302 dihydroxy-acid dehydratase — —

Not shown: 2 genomes with orthologs for Psyr_0168 only; 44 genomes with orthologs for Psyr_0469 only