| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_1974 | | Excinuclease ABC subunit B | 1.0 | Psyr_0003 | | DNA replication and repair protein RecF | 0.73 | 5 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_1974 | | Excinuclease ABC subunit B | 1.00 | Psyr_0003 | | DNA replication and repair protein RecF | 0.78 | 5 |
| Pseudomonas orientalis W4I3 | 0.96 | QF045_RS20805 | | excinuclease ABC subunit UvrB | 0.93 | QF045_RS02960 | | DNA replication/repair protein RecF | low | > 93 |
| Pseudomonas fluorescens FW300-N2E2 | 0.96 | Pf6N2E2_52 | | Excinuclease ABC subunit B | 0.91 | Pf6N2E2_4197 | | DNA recombination and repair protein RecF | 0.71 | 3 |
| Pseudomonas fluorescens FW300-N2C3 | 0.96 | AO356_21335 | | excinuclease ABC subunit B | 0.93 | AO356_11635 | | recombinase RecF | 0.79 | 4 |
| Pseudomonas fluorescens SBW25 | 0.96 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.93 | PFLU_RS00015 | | DNA replication/repair protein RecF | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.96 | PFLU_RS20655 | | excinuclease ABC subunit B | 0.93 | PFLU_RS00015 | | DNA replication/repair protein RecF | low | > 109 |
| Pseudomonas simiae WCS417 | 0.96 | PS417_18685 | | excinuclease ABC subunit B | 0.90 | PS417_00015 | | recombinase RecF | 0.56 | 6 |
| Pseudomonas sp. RS175 | 0.95 | PFR28_02837 | | UvrABC system protein B | 0.93 | PFR28_04593 | | DNA replication and repair protein RecF | low | > 88 |
| Pseudomonas sp. DMC3 | 0.95 | GFF774 | | UvrABC system protein B | 0.93 | GFF578 | | DNA replication and repair protein RecF | low | > 89 |
| Pseudomonas lactucae CFBP13502 | 0.95 | GEMAOFIL_03964 | | UvrABC system protein B | 0.93 | GEMAOFIL_00183 | | DNA replication and repair protein RecF | low | > 96 |
| Pseudomonas fluorescens FW300-N2E3 | 0.95 | AO353_20545 | | excinuclease ABC subunit B | 0.94 | AO353_10480 | | recombinase RecF | 0.54 | 12 |
| Pseudomonas fluorescens FW300-N1B4 | 0.95 | Pf1N1B4_26 | | Excinuclease ABC subunit B | 0.93 | Pf1N1B4_1927 | | DNA recombination and repair protein RecF | 0.65 | 2 |
| Pseudomonas fluorescens GW456-L13 | 0.94 | PfGW456L13_3959 | | Excinuclease ABC subunit B | 0.91 | PfGW456L13_664 | | DNA recombination and repair protein RecF | 0.33 | 16 |
| Pseudomonas sp. SVBP6 | 0.92 | COO64_RS05730 | uvrB | excinuclease ABC subunit UvrB | 0.93 | COO64_RS02120 | recF | DNA replication/repair protein RecF | low | > 93 |
| Pseudomonas segetis P6 | 0.92 | ACVTMO_RS15315 | uvrB | excinuclease ABC subunit UvrB | 0.87 | ACVTMO_RS01255 | recF | DNA replication/repair protein RecF | low | > 75 |
| Pseudomonas putida KT2440 | 0.91 | PP_1974 | | excinuclease UvrABC protein B | 0.89 | PP_0012 | | DNA replication and repair protein | — | — |
| Pseudomonas sp. BP01 | 0.91 | JOY50_RS16715 | uvrB | excinuclease ABC subunit UvrB | 0.91 | JOY50_RS08340 | recF | DNA replication/repair protein RecF | low | > 84 |
| Pseudomonas stutzeri RCH2 | 0.90 | Psest_1296 | | excinuclease ABC, B subunit | 0.77 | Psest_0004 | | recF protein | 0.81 | 4 |
| Pseudomonas sp. S08-1 | 0.88 | OH686_04580 | | excinuclease ABC subunit B | 0.85 | OH686_12620 | | DNA recombination and repair protein RecF | low | > 80 |
| Pseudomonas aeruginosa PA14 | 0.87 | IKLFDK_15985 | | excinuclease ABC subunit UvrB | 0.82 | IKLFDK_25545 | | DNA replication/repair protein RecF | 0.62 | 3 |
| Marinobacter adhaerens HP15 | 0.76 | HP15_1372 | | excinuclease ABC subunit B | 0.36 | HP15_3705 | | DNA replication and repair protein recF | 0.49 | 35 |
| Serratia liquefaciens MT49 | 0.74 | IAI46_06550 | | excinuclease ABC subunit B | 0.39 | IAI46_00015 | | DNA replication/repair protein RecF | 0.67 | 3 |
| Pectobacterium carotovorum WPP14 | 0.73 | HER17_RS13420 | | excinuclease ABC subunit B | 0.39 | HER17_RS00015 | | DNA replication/repair protein RecF | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.73 | CSW01_05185 | | excinuclease ABC subunit UvrB | 0.37 | CSW01_00065 | | DNA replication and repair protein RecF | low | > 62 |
| Kangiella aquimarina DSM 16071 | 0.73 | B158DRAFT_2341 | | Excinuclease ABC subunit B | 0.32 | B158DRAFT_0366 | | DNA replication and repair protein RecF | 0.78 | 3 |
| Rahnella sp. WP5 | 0.72 | EX31_RS23720 | | excinuclease ABC subunit B | 0.38 | EX31_RS05975 | | DNA replication/repair protein RecF | low | > 89 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.72 | Xcc-8004.2034.1 | | Excinuclease ABC subunit B | 0.24 | Xcc-8004.4.1 | | DNA recombination and repair protein RecF | low | > 74 |
| Dickeya dianthicola ME23 | 0.72 | DZA65_RS08990 | | excinuclease ABC subunit B | 0.38 | DZA65_RS00015 | | DNA replication/repair protein RecF | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.72 | LU632_RS09160 | uvrB | excinuclease ABC subunit B | 0.36 | LU632_RS00015 | recF | DNA replication/repair protein RecF | low | > 73 |
| Erwinia tracheiphila HP pepo 2.2 | 0.72 | IJEDHG_19590 | uvrB | excinuclease ABC subunit UvrB | 0.36 | IJEDHG_09800 | recF | DNA replication/repair protein RecF | low | > 61 |
| Dickeya dadantii 3937 | 0.72 | DDA3937_RS08530 | | excinuclease ABC subunit B | 0.38 | DDA3937_RS21285 | | DNA replication/repair protein RecF | low | > 74 |
| Dickeya dianthicola 67-19 | 0.72 | HGI48_RS08695 | | excinuclease ABC subunit B | 0.38 | HGI48_RS00015 | | DNA replication/repair protein RecF | low | > 71 |
| Shewanella oneidensis MR-1 | 0.71 | SO2506 | uvrB | excinuclease ABC, B subunit (NCBI ptt file) | 0.42 | SO0010 | recF | DNA replication and repair protein RecF (NCBI ptt file) | 0.43 | 13 |
| Shewanella loihica PV-4 | 0.71 | Shew_2064 | | excinuclease ABC subunit B (RefSeq) | 0.39 | Shew_0003 | | DNA replication and repair protein RecF (RefSeq) | 0.84 | 4 |
| Erwinia amylovora T8 | 0.71 | OLJFJH_16735 | | excinuclease ABC subunit UvrB | 0.36 | OLJFJH_05150 | | DNA replication/repair protein RecF | low | > 58 |
| Shewanella sp. ANA-3 | 0.71 | Shewana3_2166 | | excinuclease ABC subunit B (RefSeq) | 0.42 | Shewana3_0011 | recF | recombination protein F (RefSeq) | low | > 73 |
| Pantoea agglomerans CFBP13505 P0401 | 0.71 | PagCFBP13505_RS03805 | | excinuclease ABC subunit B | 0.36 | PagCFBP13505_RS19305 | | DNA replication/repair protein RecF | low | > 74 |
| Enterobacter asburiae PDN3 | 0.71 | EX28DRAFT_2211 | | Excinuclease ABC subunit B | 0.37 | EX28DRAFT_3987 | | DNA replication and repair protein RecF | low | > 76 |
| Enterobacter sp. TBS_079 | 0.71 | MPMX20_01408 | | UvrABC system protein B | 0.37 | MPMX20_00003 | | DNA replication and repair protein RecF | 0.37 | 28 |
| Escherichia coli Nissle 1917 | 0.71 | ECOLIN_RS04150 | | excinuclease ABC subunit UvrB | 0.38 | ECOLIN_RS21310 | | DNA replication/repair protein RecF | low | > 55 |
| Klebsiella michiganensis M5al | 0.71 | BWI76_RS08785 | | excinuclease ABC subunit B | 0.37 | BWI76_RS00010 | | DNA replication and repair protein RecF | low | > 92 |
| Pantoea sp. MT58 | 0.71 | IAI47_13505 | | excinuclease ABC subunit B | 0.37 | IAI47_00015 | | DNA replication/repair protein RecF | low | > 76 |
| Escherichia coli ECRC102 | 0.71 | NIAGMN_04425 | uvrB | excinuclease ABC subunit UvrB | 0.38 | NIAGMN_12780 | recF | DNA replication/repair protein RecF | low | > 80 |
| Escherichia coli ECRC98 | 0.71 | JDDGAC_10015 | uvrB | excinuclease ABC subunit UvrB | 0.38 | JDDGAC_18645 | recF | DNA replication/repair protein RecF | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.71 | OHPLBJKB_02934 | | UvrABC system protein B | 0.38 | OHPLBJKB_00003 | | DNA replication and repair protein RecF | low | > 74 |
| Escherichia coli BW25113 | 0.71 | b0779 | uvrB | excinuclease ABC subunit B (NCBI) | 0.38 | b3700 | recF | recombination protein F (NCBI) | 0.81 | 4 |
| Escherichia coli ECRC101 | 0.71 | MCAODC_25595 | uvrB | excinuclease ABC subunit UvrB | 0.38 | MCAODC_05535 | recF | DNA replication/repair protein RecF | low | > 87 |
| Escherichia coli ECRC62 | 0.71 | BNILDI_21020 | uvrB | excinuclease ABC subunit UvrB | 0.38 | BNILDI_04365 | recF | DNA replication/repair protein RecF | low | > 75 |
| Escherichia coli BL21 | 0.71 | ECD_00746 | | exision nuclease of nucleotide excision repair, DNA damage recognition component | 0.38 | ECD_03583 | | gap repair protein | 0.74 | 6 |
| Klebsiella pneumoniae MKP103 | 0.71 | KDGMDA_17050 | | excinuclease ABC subunit UvrB | 0.37 | KDGMDA_08670 | | DNA replication/repair protein RecF | low | > 95 |
| Escherichia coli ECRC99 | 0.71 | KEDOAH_21530 | uvrB | excinuclease ABC subunit UvrB | 0.38 | KEDOAH_13125 | recF | DNA replication/repair protein RecF | — | — |
| Escherichia coli ECRC100 | 0.71 | OKFHMN_06380 | uvrB | excinuclease ABC subunit UvrB | 0.38 | OKFHMN_15025 | recF | DNA replication/repair protein RecF | low | > 79 |
| Escherichia coli ECOR27 | 0.71 | NOLOHH_22750 | uvrB | excinuclease ABC subunit UvrB | 0.38 | NOLOHH_07165 | recF | DNA replication/repair protein RecF | low | > 76 |
| Escherichia fergusonii Becca | 0.70 | EFB2_03326 | | UvrABC system protein B | 0.38 | EFB2_00003 | | DNA replication and repair protein RecF | low | > 86 |
| Escherichia coli ECOR38 | 0.70 | HEPCGN_01660 | uvrB | excinuclease ABC subunit UvrB | 0.38 | HEPCGN_13720 | recF | DNA replication/repair protein RecF | 0.50 | 44 |
| Lysobacter sp. OAE881 | 0.70 | ABIE51_RS15310 | | excinuclease ABC subunit UvrB | 0.25 | ABIE51_RS00765 | | DNA replication/repair protein RecF | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.70 | ABZR86_RS09750 | | excinuclease ABC subunit UvrB | 0.26 | ABZR86_RS15145 | | DNA replication/repair protein RecF | 0.86 | 7 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.70 | GFF675 | | Excinuclease ABC subunit B | 0.37 | GFF1756 | | DNA recombination and repair protein RecF | low | > 78 |
| Shewanella amazonensis SB2B | 0.70 | Sama_1828 | | excinuclease ABC subunit B (RefSeq) | 0.40 | Sama_0015 | recF | recombination protein F (RefSeq) | 0.57 | 8 |
| Rhodanobacter denitrificans MT42 | 0.70 | LRK55_RS13955 | | excinuclease ABC subunit UvrB | 0.28 | LRK55_RS08240 | | DNA replication/repair protein RecF | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.70 | LRK54_RS14235 | | excinuclease ABC subunit UvrB | 0.28 | LRK54_RS08475 | | DNA replication/repair protein RecF | low | > 59 |
| Acinetobacter baumannii LAC-4 | 0.70 | RR41_RS04945 | | excinuclease ABC subunit UvrB | 0.30 | RR41_RS00015 | | DNA replication/repair protein RecF | low | > 55 |
| Rhodanobacter sp000427505 FW510-R12 | 0.69 | LRK53_RS14375 | | excinuclease ABC subunit UvrB | 0.27 | LRK53_RS00015 | | DNA replication/repair protein RecF | low | > 59 |
| Alteromonas macleodii MIT1002 | 0.69 | MIT1002_01261 | | Excinuclease ABC subunit B | 0.35 | MIT1002_00003 | | DNA replication and repair protein RecF | low | > 70 |
| Acinetobacter radioresistens SK82 | 0.69 | MPMX26_02142 | | UvrABC system protein B | 0.30 | MPMX26_00003 | | DNA replication and repair protein RecF | 0.49 | 23 |
| Rhodanobacter sp. FW510-T8 | 0.69 | OKGIIK_03100 | uvrB | excinuclease ABC subunit UvrB | 0.27 | OKGIIK_15255 | recF | DNA replication/repair protein RecF | low | > 53 |
| Azospirillum brasilense Sp245 | 0.62 | AZOBR_RS16420 | | excinuclease ABC subunit B | 0.13 | AZOBR_RS17670 | | recombinase RecF | low | > 97 |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_03076 | | excinuclease ABC subunit B | 0.11 | CCNA_00158 | | DNA replication and repair protein recF | 0.86 | 4 |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_03076 | | excinuclease ABC subunit B | 0.11 | CCNA_00158 | | DNA replication and repair protein recF | low | > 67 |
| Magnetospirillum magneticum AMB-1 | 0.60 | AMB_RS19255 | | excinuclease ABC subunit UvrB | 0.12 | AMB_RS03285 | | DNA replication and repair protein RecF | — | — |
| Azospirillum sp. SherDot2 | 0.60 | MPMX19_01038 | | UvrABC system protein B | 0.15 | MPMX19_02716 | | DNA replication and repair protein RecF | — | — |
| Dinoroseobacter shibae DFL-12 | 0.60 | Dshi_2192 | | excinuclease ABC, B subunit (RefSeq) | 0.11 | Dshi_3375 | | SMC domain protein (RefSeq) | 0.88 | 5 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.59 | A4249_RS00555 | | excinuclease ABC subunit UvrB | 0.10 | A4249_RS15360 | | DNA replication/repair protein RecF | low | > 48 |
| Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c26160 | | uvrABC system protein B | 0.11 | PGA1_c00030 | | DNA replication and repair protein RecF | 0.70 | 4 |
| Rhodospirillum rubrum S1H | 0.59 | Rru_A1133 | | Excinuclease ABC, B subunit (NCBI) | 0.10 | Rru_A0003 | | RecF protein (NCBI) | — | — |
| Synechococcus elongatus PCC 7942 | 0.59 | Synpcc7942_0563 | uvrB | excinuclease ABC subunit B | 0.09 | Synpcc7942_2250 | recF | recombination protein F | low | > 38 |
| Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_3779 | | Excinuclease ABC subunit B | 0.13 | Ga0059261_2727 | | DNA replication and repair protein RecF | — | — |
| Sphingobium sp. HT1-2 | 0.58 | GFF700 | | Excinuclease ABC subunit B | 0.13 | GFF730 | | DNA recombination and repair protein RecF | low | > 95 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.56 | CA265_RS19430 | | excinuclease ABC subunit B | 0.17 | CA265_RS24760 | | DNA replication and repair protein RecF | 0.94 | 5 |
| Parabacteroides merdae CL09T00C40 | 0.56 | HMPREF1078_RS15855 | | excinuclease ABC subunit UvrB | 0.18 | HMPREF1078_RS14620 | | DNA replication and repair protein RecF | low | > 61 |
| Synechocystis sp000284455 PCC 6803 | 0.55 | SGL_RS14040 | | excinuclease ABC subunit UvrB | 0.10 | SGL_RS07025 | | DNA replication/repair protein RecF | — | — |
| Cellulophaga baltica 18 | 0.55 | M666_RS19015 | | excinuclease ABC subunit UvrB | 0.15 | M666_RS11055 | | DNA replication and repair protein RecF | low | > 67 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.55 | ABZR88_RS18110 | | excinuclease ABC subunit UvrB | 0.15 | ABZR88_RS21650 | | DNA replication/repair protein RecF | low | > 71 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.55 | Echvi_1215 | | excinuclease ABC, B subunit | 0.17 | Echvi_1156 | | recF protein | 0.87 | 6 |
| Fusobacterium nucleatum SB010 | 0.55 | HUW76_02625 | | excinuclease ABC subunit UvrB | 0.17 | HUW76_00025 | | DNA replication/repair protein RecF | — | — |
| Mycobacterium tuberculosis H37Rv | 0.54 | Rv1633 | | Probable excinuclease ABC (subunit B-helicase) UvrB | 0.11 | Rv0003 | | DNA replication and repair protein RecF (single-strand DNA binding protein) | 0.38 | 12 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.54 | CA264_19110 | | excinuclease ABC subunit B | 0.12 | CA264_17475 | | DNA replication and repair protein RecF | 0.64 | 4 |
| Phocaeicola dorei CL03T12C01 | 0.52 | ABI39_RS15300 | | excinuclease ABC subunit UvrB | 0.15 | ABI39_RS13135 | | DNA replication and repair protein RecF | low | > 72 |
| Bacteroides stercoris CC31F | 0.52 | HMPREF1181_RS15225 | | excinuclease ABC subunit UvrB | 0.17 | HMPREF1181_RS06185 | | DNA replication and repair protein RecF | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.52 | HMPREF1058_RS01765 | | excinuclease ABC subunit UvrB | 0.16 | HMPREF1058_RS17135 | | DNA replication and repair protein RecF | 0.58 | 32 |
| Bifidobacterium breve UCC2003 | 0.52 | BBR_RS14285 | | excinuclease ABC subunit UvrB | 0.14 | BBR_RS10265 | | DNA replication and repair protein RecF | 0.71 | 6 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.52 | BT0570 | | excinuclease ABC subunit B (NCBI ptt file) | 0.16 | BT4255 | | DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) | 0.57 | 23 |
| Bacteroides ovatus ATCC 8483 | 0.52 | BACOVA_03714 | | excinuclease ABC, B subunit | 0.17 | BACOVA_05088 | | DNA replication and repair protein RecF | low | > 96 |
Not shown: 24 genomes with orthologs for Psyr_1974 only; 6 genomes with orthologs for Psyr_0003 only