| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Azospirillum sp. SherDot2 | 1.0 | MPMX19_01939 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 1.0 | MPMX19_04419 | | Periplasmic dipeptide transport protein | 0.79 | 8 |
| Azospirillum brasilense Sp245 | 0.84 | AZOBR_RS04055 | | phosphoglyceromutase | 0.83 | AZOBR_RS21760 | | peptide ABC transporter substrate-binding protein | — | — |
| Rhodospirillum rubrum S1H | 0.57 | Rru_A1234 | | Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (NCBI) | 0.59 | Rru_A2356 | | extracellular solute-binding protein, family 5 (NCBI) | — | — |
| Agrobacterium fabrum C58 | 0.52 | Atu3469 | | phosphoglyceromutase | 0.53 | Atu4113 | | dipeptide ABC transporter substrate-binding protein | low | > 89 |
| Kangiella aquimarina DSM 16071 | 0.49 | B158DRAFT_0706 | | phosphoglycerate mutase (EC 5.4.2.1) | 0.48 | B158DRAFT_1047 | | ABC-type dipeptide transport system, periplasmic component | — | — |
| Rahnella sp. WP5 | 0.48 | EX31_RS14360 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.59 | EX31_RS05515 | | ABC transporter substrate-binding protein | low | > 89 |
| Enterobacter asburiae PDN3 | 0.48 | EX28DRAFT_3863 | | phosphoglycerate mutase (EC 5.4.2.1) | 0.60 | EX28DRAFT_3804 | | ABC-type dipeptide transport system, periplasmic component | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.48 | GFF398 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) | 0.61 | GFF475 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | low | > 78 |
| Shewanella amazonensis SB2B | 0.48 | Sama_0060 | | phosphoglyceromutase (RefSeq) | 0.41 | Sama_1235 | | peptide ABC transporter, periplasmic peptide-binding protein (RefSeq) | — | — |
| Serratia liquefaciens MT49 | 0.48 | IAI46_24710 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.60 | IAI46_00475 | | ABC transporter substrate-binding protein | low | > 86 |
| Escherichia fergusonii Becca | 0.48 | EFB2_00198 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.60 | EFB2_00263 | | Periplasmic dipeptide transport protein | low | > 86 |
| Escherichia coli ECOR27 | 0.48 | NOLOHH_07615 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.60 | NOLOHH_08040 | dppA | dipeptide ABC transporter substrate-binding protein DppA | low | > 76 |
| Escherichia coli Nissle 1917 | 0.48 | ECOLIN_RS20615 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.60 | ECOLIN_RS20280 | | dipeptide ABC transporter substrate-binding protein DppA | low | > 55 |
| Klebsiella pneumoniae MKP103 | 0.48 | KDGMDA_07915 | | 2 3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.60 | KDGMDA_07610 | | Dipeptide-binding protein | low | > 95 |
| Escherichia coli ECOR38 | 0.48 | HEPCGN_14575 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.60 | HEPCGN_14960 | dppA | dipeptide ABC transporter substrate-binding protein DppA | low | > 88 |
| Pseudomonas sp. SVBP6 | 0.48 | COO64_RS13295 | gpmI | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.52 | COO64_RS04120 | | ABC transporter substrate-binding protein | — | — |
| Escherichia coli BW25113 | 0.48 | b3612 | gpmI | phosphoglyceromutase (NCBI) | 0.60 | b3544 | dppA | dipeptide transporter (NCBI) | low | > 76 |
| Pseudomonas sp. BP01 | 0.48 | JOY50_RS09420 | gpmI | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.51 | JOY50_RS10980 | | ABC transporter substrate-binding protein | — | — |
| Escherichia coli ECRC101 | 0.48 | MCAODC_06245 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.60 | MCAODC_06615 | dppA | dipeptide ABC transporter substrate-binding protein DppA | low | > 88 |
| Enterobacter sp. TBS_079 | 0.48 | MPMX20_00121 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.60 | MPMX20_00190 | | Periplasmic dipeptide transport protein | low | > 85 |
| Escherichia coli ECRC99 | 0.48 | KEDOAH_12415 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.60 | KEDOAH_12050 | dppA | dipeptide ABC transporter substrate-binding protein DppA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.48 | OHPLBJKB_00087 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.60 | OHPLBJKB_00162 | | Periplasmic dipeptide transport protein | low | > 74 |
| Escherichia coli ECRC62 | 0.48 | BNILDI_03900 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.60 | BNILDI_03520 | dppA | dipeptide ABC transporter substrate-binding protein DppA | low | > 75 |
| Escherichia coli ECRC100 | 0.48 | OKFHMN_15735 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.60 | OKFHMN_16100 | dppA | dipeptide ABC transporter substrate-binding protein DppA | low | > 79 |
| Escherichia coli ECRC98 | 0.48 | JDDGAC_19360 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.60 | JDDGAC_19730 | dppA | dipeptide ABC transporter substrate-binding protein DppA | low | > 87 |
| Escherichia coli BL21 | 0.48 | ECD_03470 | | phosphoglycero mutase III, cofactor-independent | 0.60 | ECD_03395 | | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor | low | > 61 |
| Escherichia coli ECRC102 | 0.48 | NIAGMN_13495 | gpmM | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.60 | NIAGMN_13860 | dppA | dipeptide ABC transporter substrate-binding protein DppA | low | > 80 |
| Acinetobacter baumannii LAC-4 | 0.48 | RR41_RS17810 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.07 | RR41_RS12220 | | ABC transporter substrate-binding protein | — | — |
| Klebsiella michiganensis M5al | 0.48 | BWI76_RS27230 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.59 | BWI76_RS26885 | | ABC transporter substrate-binding protein | low | > 92 |
| Pseudomonas putida KT2440 | 0.47 | PP_5056 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.51 | PP_0885 | | dipeptide ABC transporter - periplasmic binding protein | — | — |
| Shewanella oneidensis MR-1 | 0.47 | SO0049 | gpmA | phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (NCBI ptt file) | 0.39 | SO1805 | sapA | peptide ABC transporter, periplasmic peptide-binding protein (NCBI ptt file) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_12115 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.51 | AO353_05375 | | peptide ABC transporter substrate-binding protein | low | > 101 |
| Pseudomonas segetis P6 | 0.47 | MPMX49_04294 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.54 | MPMX49_03884 | | Periplasmic dipeptide transport protein | — | — |
| Shewanella sp. ANA-3 | 0.47 | Shewana3_0051 | | phosphoglyceromutase (RefSeq) | 0.40 | Shewana3_2650 | | acetate kinase (RefSeq) | — | — |
| Pseudomonas aeruginosa PA14 | 0.46 | IKLFDK_27850 | | 2 3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.53 | IKLFDK_01600 | | Di/tripeptide-binding protein 1 | — | — |
| Pseudomonas sp. DMC3 | 0.46 | GFF4089 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.51 | GFF5026 | | Periplasmic dipeptide transport protein | — | — |
| Pseudomonas sp. RS175 | 0.46 | PFR28_04938 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.50 | PFR28_00130 | | Periplasmic dipeptide transport protein | — | — |
| Shewanella loihica PV-4 | 0.46 | Shew_3806 | | phosphoglyceromutase (RefSeq) | 0.37 | Shew_2498 | | extracellular solute-binding protein (RefSeq) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_353 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) | 0.51 | PfGW456L13_5051 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_4885 | | phosphoglycerate mutase | 0.51 | Psyr_4236 | | extracellular solute-binding protein, family 5 | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_4885 | | phosphoglycerate mutase | 0.51 | Psyr_4236 | | extracellular solute-binding protein, family 5 | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_09770 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.51 | AO356_07240 | | peptide ABC transporter substrate-binding protein | — | — |
| Pseudomonas fluorescens SBW25 | 0.46 | PFLU_RS01655 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.50 | PFLU_RS04125 | | ABC transporter substrate-binding protein | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.46 | Pf1N1B4_1617 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) | 0.51 | Pf1N1B4_1120 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | low | > 87 |
| Pseudomonas lactucae CFBP13502 | 0.46 | GEMAOFIL_00541 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.50 | GEMAOFIL_01019 | | Periplasmic dipeptide transport protein | low | > 93 |
| Pseudomonas fluorescens SBW25-INTG | 0.46 | PFLU_RS01655 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.50 | PFLU_RS04125 | | ABC transporter substrate-binding protein | — | — |
| Pseudomonas simiae WCS417 | 0.46 | PS417_01605 | | phosphoglycerate mutase | 0.50 | PS417_04085 | | peptide ABC transporter substrate-binding protein | low | > 88 |
| Pseudomonas sp. S08-1 | 0.45 | OH686_14655 | | phosphoglycerate mutase (2,3-diphosphoglycerate-independent) | 0.51 | OH686_08695 | | Dipeptide ABC transporter, substrate-binding protein DppA | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.45 | Pf6N2E2_3832 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) | 0.50 | Pf6N2E2_3308 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.45 | CSW01_01740 | | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | 0.32 | CSW01_08445 | | ABC transporter substrate-binding protein | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.39 | DvMF_0439 | | phosphoglyceromutase (RefSeq) | 0.15 | DvMF_0788 | | extracellular solute-binding protein family 5 (RefSeq) | — | — |
Not shown: 25 genomes with orthologs for MPMX19_01939 only; 20 genomes with orthologs for MPMX19_04419 only