Conservation of cofitness between MIT1002_03473 and MIT1002_03976 in Alteromonas macleodii MIT1002

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Alteromonas macleodii MIT1002 1.0 MIT1002_03473 5-keto-D-gluconate transporter 1.0 MIT1002_03976 Pullulanase secretion envelope PulD 0.50 11
Pseudomonas putida KT2440 0.36 PP_3417 D-gluconate transporter 0.21 PP_1046 Type II secretion pathway protein XcpQ low > 96
Pseudomonas sp. SVBP6 0.36 COO64_RS25580 GntP family permease 0.24 COO64_RS04775 gspD type II secretion system secretin GspD low > 93
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS28835 gluconate:H+ symporter (gntT) (from data) 0.18 RR42_RS19520 general secretion pathway protein GspD low > 128
Pseudomonas sp. BP01 0.36 JOY50_RS23615 GntP family permease 0.19 JOY50_RS11570 gspD type II secretion system secretin GspD — —
Enterobacter sp. TBS_079 0.36 MPMX20_04302 High-affinity gluconate transporter 0.37 MPMX20_01515 Putative secretin GspD low > 85
Dickeya dianthicola ME23 0.35 DZA65_RS20960 gluconate transporter 0.22 DZA65_RS16270 type II secretion system secretin GspD low > 75
Klebsiella michiganensis M5al 0.35 BWI76_RS26235 gluconate transporter 0.42 BWI76_RS05090 type II secretion system protein GspD low > 92
Enterobacter asburiae PDN3 0.35 EX28DRAFT_4127 gluconate transporter 0.39 EX28DRAFT_2079 type II secretion system protein D low > 76
Dickeya dianthicola 67-19 0.35 HGI48_RS19890 gluconate transporter 0.22 HGI48_RS15450 type II secretion system secretin GspD low > 71
Dickeya dadantii 3937 0.35 DDA3937_RS19775 gluconate transporter 0.40 DDA3937_RS14800 type II secretion system secretin GspD low > 74
Escherichia coli BL21 0.35 ECD_04131 L-idonate and D-gluconate transporter 0.49 ECD_02838 putative type II secretion protein GspD low > 61
Escherichia coli ECOR38 0.35 HEPCGN_09955 idnT gnt-II system L-idonate transporter 0.49 HEPCGN_18050 gspD general secretion pathway protein D low > 88
Escherichia fergusonii Becca 0.35 EFB2_04270 Gnt-II system L-idonate transporter 0.49 EFB2_00845 Secretin GspD 2 low > 86
Escherichia coli ECOR27 0.35 NOLOHH_04030 idnT gnt-II system L-idonate transporter 0.49 NOLOHH_10975 gspD general secretion pathway protein D low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_03771 Gnt-II system L-idonate transporter 0.49 OHPLBJKB_00739 Type II secretion system protein D low > 74
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS18165 permease 0.21 RALBFv3_RS07740 type II secretion system protein GspD low > 76
Escherichia coli BW25113 0.35 b4265 idnT L-idonate and D-gluconate transporter (NCBI) 0.37 b3325 yheF putative general protein secretion protein (VIMSS) low > 76
Ralstonia solanacearum GMI1000 0.35 RS_RS22870 permease 0.21 RS_RS15640 type II secretion system protein GspD low > 80
Ralstonia solanacearum UW163 0.35 UW163_RS20965 permease 0.21 UW163_RS05885 type II secretion system protein GspD — —
Ralstonia solanacearum PSI07 0.35 RPSI07_RS05470 permease 0.21 RPSI07_RS09520 type II secretion system protein GspD 0.61 20
Pseudomonas aeruginosa MRSN321 0.35 DY961_RS18000 GntP family permease 0.26 DY961_RS01400 xcpQ;inference=COORDINATES GspD family T2SS secretin variant XcpQ low > 100
Pseudomonas aeruginosa PUPa3 0.35 DQ20_RS59240 GntP family permease 0.26 DQ20_RS34155 xcpQ;inference=COORDINATES GspD family T2SS secretin variant XcpQ low > 101
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS19095 gluconate:H+ symporter 0.19 ABZR87_RS03450 type II secretion system secretin GspD low > 80
Pseudomonas aeruginosa PA14 0.35 IKLFDK_11385 Gluconate permease 0.26 IKLFDK_15800 GspD family T2SS secretin variant XcpQ low > 98
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_25205 permease DsdX 0.21 AO353_12545 type II secretion system protein GspD low > 101
Escherichia coli ECRC101 0.34 MCAODC_07375 gntU gluconate transporter 0.40 MCAODC_15265 etpD variant type II secretion system secretin EtpD low > 87
Escherichia coli ECRC98 0.34 JDDGAC_20475 gntU gluconate transporter 0.40 JDDGAC_30295 etpD variant type II secretion system secretin EtpD low > 87
Rahnella sp. WP5 0.34 EX31_RS16635 gluconate transporter 0.42 EX31_RS16165 type II secretion system secretin GspD low > 89
Escherichia coli ECRC100 0.34 OKFHMN_16845 gntU gluconate transporter 0.40 OKFHMN_00285 etpD variant type II secretion system secretin EtpD low > 79
Escherichia coli ECRC102 0.34 NIAGMN_14615 gntU gluconate transporter 0.40 NIAGMN_28605 etpD variant type II secretion system secretin EtpD low > 80
Escherichia coli Nissle 1917 0.34 ECOLIN_RS19665 gluconate transporter 0.49 ECOLIN_RS17085 type II secretion system secretin GspD low > 55
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_1927 Gluconate permease 0.21 PfGW456L13_266 General secretion pathway protein D low > 87
Pseudomonas simiae WCS417 0.34 PS417_21980 permease DsdX 0.19 PS417_11295 general secretion pathway protein GspD low > 88
Pseudomonas fluorescens SBW25 0.34 PFLU_RS23585 GntP family permease 0.19 PFLU_RS11890 type II secretion system secretin GspD low > 109
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS23585 GntP family permease 0.19 PFLU_RS11890 type II secretion system secretin GspD low > 109
Erwinia tracheiphila HP pepo 2.2 0.34 IJEDHG_08030 gntU gluconate transporter 0.27 IJEDHG_09690 Type II secretion system protein GspD low > 61
Erwinia tracheiphila SCR3 0.34 LU632_RS19170 gntU gluconate transporter 0.27 LU632_RS25230 gspD type II secretion system secretin GspD low > 73
Klebsiella pneumoniae MKP103 0.34 KDGMDA_07030 gluconate transporter 0.40 KDGMDA_13345 GspD family T2SS secretin variant PulD low > 95
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_05055 permease DsdX 0.21 AO356_09345 type II secretion system protein GspD low > 104
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_2863 Gluconate permease 0.21 Pf6N2E2_3746 General secretion pathway protein D low > 103
Sphingomonas koreensis DSMZ 15582 0.34 Ga0059261_1667 gluconate permease GntT (TC 2.A.8.1.4) 0.17 Ga0059261_3945 type II secretion system protein D low > 68
Pseudomonas sp. RS175 0.34 PFR28_00595 High-affinity gluconate transporter 0.19 PFR28_01750 Secretin XcpQ low > 88
Pseudomonas sp. DMC3 0.34 GFF4936 High-affinity gluconate transporter 0.14 GFF2989 Secretin OutD low > 89
Acinetobacter baumannii LAC-4 0.31 RR41_RS16520 gluconate:H+ symporter 0.24 RR41_RS17625 type II secretion system secretin GspD low > 55
Acidovorax sp. GW101-3H11 0.31 Ac3H11_3740 Gluconate permease 0.19 Ac3H11_2030 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) low > 79
Variovorax sp. SCN45 0.28 GFF1885 Gluconate transporter family protein 0.19 GFF5235 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) low > 127
Pectobacterium carotovorum WPP14 0.28 HER17_RS01460 GntP family permease 0.41 HER17_RS06685 type II secretion system secretin GspD low > 75
Vibrio cholerae E7946 ATCC 55056 0.28 CSW01_01470 permease 0.51 CSW01_13790 type II secretion system protein GspD — —
Sphingobium sp. HT1-2 0.24 GFF1926 Gluconate transporter family protein 0.19 GFF3519 General secretion pathway protein D low > 95
Shewanella loihica PV-4 0.21 Shew_2533 gluconate transporter (RefSeq) 0.53 Shew_3619 general secretion pathway protein D (RefSeq) low > 60
Shewanella oneidensis MR-1 0.18 SO1771 permease, GntP family (NCBI ptt file) 0.54 SO0166 gspD general secretion pathway protein D (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.17 Shewana3_2684 gluconate transporter (RefSeq) 0.53 Shewana3_0151 general secretion pathway protein D (RefSeq) low > 73

Not shown: 24 genomes with orthologs for MIT1002_03473 only; 11 genomes with orthologs for MIT1002_03976 only