Conservation of cofitness between LU632_RS20110 and LU632_RS19625 in Erwinia tracheiphila SCR3

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Erwinia tracheiphila SCR3 1.0 LU632_RS20110 panD aspartate 1-decarboxylase 1.0 LU632_RS19625 ppc phosphoenolpyruvate carboxylase 0.81 1
Erwinia tracheiphila HP pepo 2.2 1.00 IJEDHG_15030 panD aspartate 1-decarboxylase 1.00 IJEDHG_13035 ppc phosphoenolpyruvate carboxylase low > 61
Erwinia amylovora T8 0.94 OLJFJH_00795 aspartate 1-decarboxylase 0.88 OLJFJH_06110 Phosphoenolpyruvate carboxylase low > 58
Pantoea agglomerans CFBP13505 P0401 0.91 PagCFBP13505_RS13335 aspartate 1-decarboxylase 0.88 PagCFBP13505_RS18445 phosphoenolpyruvate carboxylase low > 74
Pantoea sp. MT58 0.90 IAI47_15665 aspartate 1-decarboxylase 0.88 IAI47_00895 phosphoenolpyruvate carboxylase 0.41 20
Rahnella sp. WP5 0.89 EX31_RS03290 aspartate 1-decarboxylase 0.82 EX31_RS14200 phosphoenolpyruvate carboxylase low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF93 Aspartate 1-decarboxylase (EC 4.1.1.11) 0.82 GFF2342 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 78
Escherichia coli ECRC62 0.85 BNILDI_08910 panD aspartate 1-decarboxylase 0.82 BNILDI_05785 ppc phosphoenolpyruvate carboxylase low > 75
Escherichia coli ECRC102 0.85 NIAGMN_08265 panD aspartate 1-decarboxylase 0.82 NIAGMN_11345 ppc phosphoenolpyruvate carboxylase low > 80
Escherichia fergusonii Becca 0.85 EFB2_03914 Aspartate 1-decarboxylase 0.82 EFB2_04658 Phosphoenolpyruvate carboxylase low > 86
Escherichia coli ECRC101 0.85 MCAODC_00930 panD aspartate 1-decarboxylase 0.82 MCAODC_04095 ppc phosphoenolpyruvate carboxylase 0.41 35
Escherichia coli ECOR27 0.85 NOLOHH_02760 panD aspartate 1-decarboxylase 0.82 NOLOHH_05740 ppc phosphoenolpyruvate carboxylase low > 76
Escherichia coli BL21 0.85 ECD_00130 aspartate 1-decarboxylase 0.82 ECD_03841 phosphoenolpyruvate carboxylase low > 61
Escherichia coli ECRC99 0.85 KEDOAH_17740 panD aspartate 1-decarboxylase 0.82 KEDOAH_14565 ppc phosphoenolpyruvate carboxylase — —
Escherichia coli ECRC98 0.85 JDDGAC_14010 panD aspartate 1-decarboxylase 0.82 JDDGAC_17220 ppc phosphoenolpyruvate carboxylase low > 87
Escherichia coli ECRC100 0.85 OKFHMN_10415 panD aspartate 1-decarboxylase 0.82 OKFHMN_13595 ppc phosphoenolpyruvate carboxylase low > 79
Escherichia coli BW25113 0.85 b0131 panD aspartate 1-decarboxylase precursor (NCBI) 0.82 b3956 ppc phosphoenolpyruvate carboxylase (NCBI) low > 76
Escherichia coli ECOR38 0.85 HEPCGN_08395 panD aspartate 1-decarboxylase 0.82 HEPCGN_12240 ppc phosphoenolpyruvate carboxylase 0.56 61
Escherichia coli Nissle 1917 0.85 ECOLIN_RS00725 aspartate 1-decarboxylase 0.82 ECOLIN_RS22835 phosphoenolpyruvate carboxylase low > 55
Serratia liquefaciens MT49 0.85 IAI46_21250 aspartate 1-decarboxylase 0.83 IAI46_24525 phosphoenolpyruvate carboxylase low > 87
Klebsiella michiganensis M5al 0.85 BWI76_RS04985 aspartate 1-decarboxylase 0.83 BWI76_RS00835 phosphoenolpyruvate carboxylase low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_03530 Aspartate 1-decarboxylase 0.82 OHPLBJKB_04094 Phosphoenolpyruvate carboxylase low > 74
Pectobacterium carotovorum WPP14 0.84 HER17_RS05550 aspartate 1-decarboxylase 0.83 HER17_RS20655 phosphoenolpyruvate carboxylase 0.84 24
Klebsiella pneumoniae MKP103 0.84 KDGMDA_13240 aspartate 1-decarboxylase 0.82 KDGMDA_09355 phosphoenolpyruvate carboxylase low > 95
Enterobacter asburiae PDN3 0.84 EX28DRAFT_3728 L-aspartate 1-decarboxylase (EC 4.1.1.11) 0.82 EX28DRAFT_4418 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) low > 76
Dickeya dadantii 3937 0.84 DDA3937_RS15965 aspartate 1-decarboxylase 0.81 DDA3937_RS20360 phosphoenolpyruvate carboxylase 0.95 3
Enterobacter sp. TBS_079 0.84 MPMX20_00825 Aspartate 1-decarboxylase 0.82 MPMX20_04524 Phosphoenolpyruvate carboxylase low > 85
Dickeya dianthicola 67-19 0.81 HGI48_RS16080 aspartate 1-decarboxylase 0.81 HGI48_RS00850 phosphoenolpyruvate carboxylase 0.82 39
Dickeya dianthicola ME23 0.81 DZA65_RS17165 aspartate 1-decarboxylase 0.80 DZA65_RS00895 phosphoenolpyruvate carboxylase 0.97 1
Dechlorosoma suillum PS 0.59 Dsui_1469 L-aspartate-alpha-decarboxylase 0.25 Dsui_1603 phosphoenolpyruvate carboxylase — —
Pseudomonas aeruginosa PUPa3 0.56 DQ20_RS52635 panD;go_function=aspartate aspartate 1-decarboxylase 0.51 DQ20_RS42585 ppc;go_function=phosphoenolpyruvate phosphoenolpyruvate carboxylase 0.33 74
Pseudomonas aeruginosa PA14 0.56 IKLFDK_29945 aspartate 1-decarboxylase 0.51 IKLFDK_18825 phosphoenolpyruvate carboxylase low > 98
Pseudomonas aeruginosa MRSN321 0.56 DY961_RS09395 aspartate 1-decarboxylase 0.51 DY961_RS14540 ppc;go_function=phosphoenolpyruvate phosphoenolpyruvate carboxylase low > 100
Ralstonia solanacearum PSI07 0.55 RPSI07_RS11525 aspartate 1-decarboxylase 0.24 RPSI07_RS13100 phosphoenolpyruvate carboxylase low > 81
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS03485 aspartate decarboxylase 0.23 HSERO_RS14670 phosphoenolpyruvate carboxylase — —
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS01345 aspartate 1-decarboxylase 0.25 ABZR87_RS16140 phosphoenolpyruvate carboxylase — —
Ralstonia solanacearum UW163 0.55 UW163_RS07850 aspartate 1-decarboxylase 0.25 UW163_RS09420 phosphoenolpyruvate carboxylase — —
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS05775 aspartate 1-decarboxylase 0.25 RALBFv3_RS04250 phosphoenolpyruvate carboxylase low > 76
Pseudomonas sp. S08-1 0.55 OH686_17235 aspartate 1-decarboxylase 0.50 OH686_06795 Phosphoenolpyruvate carboxylase low > 80
Ralstonia solanacearum GMI1000 0.54 RS_RS13665 aspartate 1-decarboxylase 0.25 RS_RS11840 phosphoenolpyruvate carboxylase — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_1519 Aspartate 1-decarboxylase (EC 4.1.1.11) 0.50 PfGW456L13_4740 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 87
Pseudomonas sp. RS175 0.54 PFR28_03723 Aspartate 1-decarboxylase 0.50 PFR28_00368 Phosphoenolpyruvate carboxylase low > 88
Pseudomonas stutzeri RCH2 0.54 Psest_0994 L-aspartate-alpha-decarboxylase 0.49 Psest_1557 Phosphoenolpyruvate carboxylase low > 67
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_14375 aspartate decarboxylase 0.50 AO353_16310 phosphoenolpyruvate carboxylase 0.31 13
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_2852 Aspartate 1-decarboxylase (EC 4.1.1.11) 0.50 Pf1N1B4_3051 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.34 13
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_5151 Aspartate 1-decarboxylase (EC 4.1.1.11) 0.50 Pf6N2E2_3103 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 103
Lysobacter sp. OAE881 0.53 ABIE51_RS08035 aspartate 1-decarboxylase 0.21 ABIE51_RS18965 phosphoenolpyruvate carboxylase — —
Caulobacter crescentus NA1000 Δfur 0.52 CCNA_02380 aspartate 1-decarboxylase 0.19 CCNA_01560 phosphoenolpyruvate carboxylase low > 67
Caulobacter crescentus NA1000 0.52 CCNA_02380 aspartate 1-decarboxylase 0.19 CCNA_01560 phosphoenolpyruvate carboxylase — —
Variovorax sp. OAS795 0.52 ABID97_RS28990 aspartate 1-decarboxylase 0.21 ABID97_RS08220 phosphoenolpyruvate carboxylase 0.54 62
Acidovorax sp. GW101-3H11 0.52 Ac3H11_3827 Aspartate 1-decarboxylase (EC 4.1.1.11) 0.23 Ac3H11_3553 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.64 43
Methylophilus sp. DMC18 0.52 GFF825 Aspartate 1-decarboxylase 0.21 GFF771 Phosphoenolpyruvate carboxylase — —
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_00149 L-aspartate 1-decarboxylase 0.23 H281DRAFT_00197 Phosphoenolpyruvate carboxylase, type 1 — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF2604 Aspartate 1-decarboxylase (EC 4.1.1.11) 0.23 GFF115 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 90
Paraburkholderia graminis OAS925 0.52 ABIE53_001259 aspartate 1-decarboxylase 0.23 ABIE53_001314 phosphoenolpyruvate carboxylase — —
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.3050.1 Aspartate 1-decarboxylase (EC 4.1.1.11) 0.24 Xcc-8004.4314.1 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) — —
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS04920 aspartate 1-decarboxylase 0.22 BPHYT_RS05225 phosphoenolpyruvate carboxylase 0.30 103
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS25070 aspartate 1-decarboxylase 0.22 QEN71_RS24955 phosphoenolpyruvate carboxylase low > 153
Brevundimonas sp. GW460-12-10-14-LB2 0.50 A4249_RS01455 aspartate 1-decarboxylase 0.21 A4249_RS12510 phosphoenolpyruvate carboxylase — —
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS00825 aspartate 1-decarboxylase 0.23 ABZR86_RS11555 phosphoenolpyruvate carboxylase — —
Acinetobacter baumannii LAC-4 0.49 RR41_RS15135 aspartate 1-decarboxylase 0.48 RR41_RS00155 phosphoenolpyruvate carboxylase — —
Acinetobacter radioresistens SK82 0.49 MPMX26_00721 Aspartate 1-decarboxylase 0.47 MPMX26_03013 Phosphoenolpyruvate carboxylase low > 36
Rhodanobacter sp000427505 FW510-R12 0.47 LRK53_RS13490 aspartate 1-decarboxylase 0.22 LRK53_RS16490 phosphoenolpyruvate carboxylase — —
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_03895 panD aspartate 1-decarboxylase 0.22 OKGIIK_11820 ppc phosphoenolpyruvate carboxylase low > 53
Rhodanobacter denitrificans MT42 0.47 LRK55_RS14840 aspartate 1-decarboxylase 0.21 LRK55_RS11810 phosphoenolpyruvate carboxylase 0.69 53
Rhodanobacter denitrificans FW104-10B01 0.47 LRK54_RS15125 aspartate 1-decarboxylase 0.21 LRK54_RS12075 phosphoenolpyruvate carboxylase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.45 Echvi_1528 L-aspartate-alpha-decarboxylase 0.11 Echvi_3727 Phosphoenolpyruvate carboxylase — —
Pedobacter sp. GW460-11-11-14-LB5 0.44 CA265_RS22705 aspartate 1-decarboxylase 0.11 CA265_RS21350 phosphoenolpyruvate carboxylase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS20500 aspartate 1-decarboxylase 0.11 ABZR88_RS09465 phosphoenolpyruvate carboxylase — —
Cellulophaga baltica 18 0.41 M666_RS03575 aspartate 1-decarboxylase 0.10 M666_RS09030 phosphoenolpyruvate carboxylase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.40 CA264_17620 aspartate 1-decarboxylase 0.11 CA264_05530 phosphoenolpyruvate carboxylase — —
Castellaniella sp019104865 MT123 0.35 ABCV34_RS05880 aspartate 1-decarboxylase 0.22 ABCV34_RS14805 phosphoenolpyruvate carboxylase — —

Not shown: 7 genomes with orthologs for LU632_RS20110 only; 30 genomes with orthologs for LU632_RS19625 only