| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Sphingobium sp. HT1-2 | 1.0 | GFF834 | | Protease II (EC 3.4.21.83) | 1.0 | GFF556 | | hypothetical protein | low | > 95 |
| Sphingomonas koreensis DSMZ 15582 | 0.72 | Ga0059261_1842 | | Protease II | 0.19 | Ga0059261_0425 | | 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases | low | > 68 |
| Xanthobacter sp. DMC5 | 0.41 | GFF4139 | | Dipeptidyl aminopeptidase BI | 0.24 | GFF2859 | | Benzoate 1,2-dioxygenase electron transfer component | — | — |
| Agrobacterium fabrum C58 | 0.41 | Atu0897 | | protease II | 0.19 | Atu1196 | | naphthalene 1,2-dioxygenase | low | > 89 |
| Pseudomonas sp. BP01 | 0.36 | JOY50_RS01480 | | S9 family peptidase | 0.20 | JOY50_RS28345 | benC | benzoate 1,2-dioxygenase electron transfer component BenC | — | — |
| Pseudomonas stutzeri RCH2 | 0.36 | Psest_2655 | | Protease II | 0.19 | Psest_2697 | | 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases | low | > 67 |
| Pseudomonas putida KT2440 | 0.35 | PP_4583 | | putative Peptidase | 0.20 | PP_3163 | | benzoate 1,2-dioxygenase electron transfer component | low | > 96 |
| Pseudomonas aeruginosa PA14 | 0.35 | IKLFDK_06190 | | peptidase S9 | 0.22 | IKLFDK_12360 | | benzoate 1 2-dioxygenase electron transfer component BenC | low | > 100 |
| Pseudomonas segetis P6 | 0.35 | MPMX49_02979 | | Protease 2 | 0.19 | MPMX49_02730 | | Benzoate 1,2-dioxygenase electron transfer component | low | > 75 |
| Pseudomonas lactucae CFBP13502 | 0.34 | GEMAOFIL_01622 | | Protease 2 | 0.20 | GEMAOFIL_04889 | | Anthranilate 1,2-dioxygenase electron transfer component | low | > 93 |
| Pseudomonas sp. SVBP6 | 0.34 | COO64_RS22275 | | S9 family peptidase | 0.19 | COO64_RS01950 | benC | benzoate 1,2-dioxygenase electron transfer component BenC | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.34 | AO353_17950 | | peptidase S9 | 0.21 | AO353_05960 | | anthranilate dioxygenase reductase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.34 | PfGW456L13_4484 | | Protease II (EC 3.4.21.83) | 0.20 | PfGW456L13_2738 | | electron transfer component of the anthranilate 1,2-dioxygenase system (EC 1.14.12.1) (from data) | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.34 | PFLU_RS07530 | | S9 family peptidase | 0.22 | PFLU_RS25505 | | anthranilate 1,2-dioxygenase electron transfer component AntC | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.34 | PFLU_RS07530 | | S9 family peptidase | 0.22 | PFLU_RS25505 | | anthranilate 1,2-dioxygenase electron transfer component AntC | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.34 | Pf1N1B4_3357 | | Protease II (EC 3.4.21.83) | 0.19 | Pf1N1B4_5798 | | 2-chlorobenzoate 1,2-dioxygenase reductase component | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.34 | AO356_04360 | | peptidase S9 | 0.15 | AO356_30365 | | CDP-6-deoxy-delta-3,4-glucoseen reductase | low | > 104 |
| Pseudomonas simiae WCS417 | 0.34 | PS417_07445 | | peptidase S9 | 0.23 | PS417_23695 | | electron transfer component of the anthranilate 1,2-dioxygenase system (EC 1.14.12.1) (from data) | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.34 | Pf6N2E2_2713 | | Protease II (EC 3.4.21.83) | 0.15 | Pf6N2E2_1936 | | 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like | low | > 103 |
| Vibrio cholerae E7946 ATCC 55056 | 0.18 | CSW01_14340 | | S9 family peptidase | 0.12 | CSW01_11650 | | NADH:ubiquinone reductase (Na(+)-transporting) subunit F | — | — |
Not shown: 12 genomes with orthologs for GFF834 only; 34 genomes with orthologs for GFF556 only