Conservation of cofitness between GFF4271 and GFF4845 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4271 Penicillin-binding protein AmpH 1.0 GFF4845 Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C) 0.41 20
Escherichia coli Nissle 1917 0.93 ECOLIN_RS02290 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.89 ECOLIN_RS15545 flavodoxin low > 55
Escherichia fergusonii Becca 0.93 EFB2_03681 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.89 EFB2_01127 hypothetical protein low > 86
Escherichia coli ECRC98 0.93 JDDGAC_12320 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.89 JDDGAC_23880 yqcA flavodoxin low > 87
Escherichia coli ECOR38 0.93 HEPCGN_07305 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.88 HEPCGN_19470 yqcA flavodoxin low > 88
Escherichia coli ECRC102 0.93 NIAGMN_06720 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.89 NIAGMN_17985 yqcA flavodoxin low > 80
Escherichia coli ECRC101 0.93 MCAODC_27890 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.89 MCAODC_10740 yqcA flavodoxin low > 88
Escherichia coli ECRC62 0.93 BNILDI_23000 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.88 BNILDI_10600 yqcA flavodoxin low > 75
Escherichia coli ECOR27 0.93 NOLOHH_01590 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.89 NOLOHH_12095 yqcA flavodoxin low > 76
Escherichia coli ECRC99 0.93 KEDOAH_19305 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.89 KEDOAH_07915 yqcA flavodoxin — —
Escherichia coli ECRC100 0.93 OKFHMN_08665 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.89 OKFHMN_20215 yqcA flavodoxin low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.93 OHPLBJKB_03299 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.89 OHPLBJKB_00941 hypothetical protein low > 74
Escherichia coli BW25113 0.93 b0376 ampH beta-lactamase/D-alanine carboxypeptidase (NCBI) 0.89 b2790 yqcA flavodoxin (NCBI) low > 76
Escherichia coli BL21 0.92 ECD_00323 D-alanyl-D-alanine- carboxypeptidase/endopeptidase; penicillin-binding protein; weak beta-lactamase 0.89 ECD_02635 short-chain flavodoxin, FMN-binding low > 61
Klebsiella michiganensis M5al 0.88 BWI76_RS06095 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.74 BWI76_RS22845 flavodoxin low > 92
Enterobacter sp. TBS_079 0.87 MPMX20_00963 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.84 MPMX20_03660 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.87 EX28DRAFT_2598 Beta-lactamase class C and other penicillin binding proteins 0.85 EX28DRAFT_2871 Flavodoxins low > 76
Klebsiella pneumoniae MKP103 0.85 KDGMDA_14190 D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.75 KDGMDA_03370 flavodoxin low > 95
Pantoea sp. MT58 0.74 IAI47_05345 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.72 IAI47_04070 flavodoxin low > 76
Pantoea agglomerans CFBP13505 P0401 0.74 PagCFBP13505_RS19890 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.73 PagCFBP13505_RS16900 flavodoxin low > 74
Erwinia tracheiphila SCR3 0.69 LU632_RS21660 ampH D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.72 LU632_RS06300 flavodoxin low > 74
Erwinia tracheiphila HP pepo 2.2 0.69 IJEDHG_13340 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.72 IJEDHG_17325 flavodoxin low > 61
Erwinia amylovora T8 0.67 OLJFJH_07570 D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.75 OLJFJH_09225 flavodoxin low > 58
Serratia liquefaciens MT49 0.61 IAI46_02780 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.71 IAI46_20285 flavodoxin low > 86
Rahnella sp. WP5 0.60 EX31_RS04370 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.67 EX31_RS13060 flavodoxin low > 89
Pseudomonas fluorescens FW300-N2E2 0.10 Pf6N2E2_2130 Beta-lactamase (EC 3.5.2.6) 0.31 Pf6N2E2_5279 Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C) low > 103
Pseudomonas fluorescens FW300-N2C3 0.09 AO356_01295 class C beta-lactamase 0.31 AO356_16770 flavodoxin low > 104
Pseudomonas segetis P6 0.08 MPMX49_01917 Beta-lactamase 0.33 MPMX49_03666 hypothetical protein low > 75
Pseudomonas lactucae CFBP13502 0.08 GEMAOFIL_03296 Beta-lactamase 0.30 GEMAOFIL_04837 hypothetical protein low > 93
Dickeya dianthicola ME23 0.07 DZA65_RS21670 serine hydrolase 0.69 DZA65_RS05430 flavodoxin low > 75
Pseudomonas fluorescens SBW25-INTG 0.07 PFLU_RS16915 class C beta-lactamase 0.30 PFLU_RS25280 flavodoxin low > 109
Pseudomonas fluorescens SBW25 0.07 PFLU_RS16915 class C beta-lactamase 0.30 PFLU_RS25280 flavodoxin low > 109
Dickeya dianthicola 67-19 0.07 HGI48_RS20655 serine hydrolase 0.69 HGI48_RS05090 flavodoxin low > 71
Pseudomonas fluorescens FW300-N1B4 0.07 Pf1N1B4_73 Beta-lactamase (EC 3.5.2.6) 0.29 Pf1N1B4_1035 Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C) 0.22 86
Pseudomonas fluorescens GW456-L13 0.07 PfGW456L13_2479 Beta-lactamase (EC 3.5.2.6) 0.29 PfGW456L13_4972 Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C) low > 87
Shewanella oneidensis MR-1 0.07 SO2388 beta-lactamase (NCBI ptt file) 0.42 SO1622 hypothetical flavodoxin (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.07 Shewana3_1990 ampC beta-lactamase (RefSeq) 0.43 Shewana3_2823 flavodoxin (RefSeq) — —

Not shown: 4 genomes with orthologs for GFF4271 only; 19 genomes with orthologs for GFF4845 only