Conservation of cofitness between GFF4271 and GFF455 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

20 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4271 Penicillin-binding protein AmpH 1.0 GFF455 FIG00638451: hypothetical protein 0.41 17
Escherichia coli Nissle 1917 0.93 ECOLIN_RS02290 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.81 ECOLIN_RS20340 HTH-type transcriptional regulator low > 55
Escherichia fergusonii Becca 0.93 EFB2_03681 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.81 EFB2_00252 hypothetical protein low > 86
Escherichia coli ECRC100 0.93 OKFHMN_08665 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.81 OKFHMN_16010 yiaG HTH-type transcriptional regulator low > 79
Escherichia coli ECRC99 0.93 KEDOAH_19305 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.81 KEDOAH_12140 yiaG HTH-type transcriptional regulator — —
Escherichia coli ECRC101 0.93 MCAODC_27890 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.81 MCAODC_06525 yiaG HTH-type transcriptional regulator low > 88
Escherichia coli ECOR27 0.93 NOLOHH_01590 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.81 NOLOHH_07955 yiaG HTH-type transcriptional regulator low > 76
Escherichia coli ECRC62 0.93 BNILDI_23000 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.81 BNILDI_03590 yiaG HTH-type transcriptional regulator low > 75
Escherichia coli ECRC98 0.93 JDDGAC_12320 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.81 JDDGAC_19640 yiaG HTH-type transcriptional regulator low > 87
Escherichia coli ECOR38 0.93 HEPCGN_07305 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.81 HEPCGN_14900 yiaG HTH-type transcriptional regulator low > 88
Escherichia coli ECRC102 0.93 NIAGMN_06720 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.81 NIAGMN_13770 yiaG HTH-type transcriptional regulator low > 80
Escherichia coli BW25113 0.93 b0376 ampH beta-lactamase/D-alanine carboxypeptidase (NCBI) 0.81 b3555 yiaG predicted transcriptional regulator (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.93 OHPLBJKB_03299 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.81 OHPLBJKB_00151 hypothetical protein low > 74
Escherichia coli BL21 0.92 ECD_00323 D-alanyl-D-alanine- carboxypeptidase/endopeptidase; penicillin-binding protein; weak beta-lactamase 0.81 ECD_03405 HTH_CROC1 family putative transcriptional regulator low > 61
Klebsiella michiganensis M5al 0.88 BWI76_RS06095 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.76 BWI76_RS26975 transcriptional regulator low > 92
Enterobacter sp. TBS_079 0.87 MPMX20_00963 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.79 MPMX20_00174 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.87 EX28DRAFT_2598 Beta-lactamase class C and other penicillin binding proteins 0.82 EX28DRAFT_3821 Predicted transcriptional regulator low > 76
Klebsiella pneumoniae MKP103 0.85 KDGMDA_14190 D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.75 KDGMDA_07705 HTH-type transcriptional regulator low > 95
Pantoea sp. MT58 0.74 IAI47_05345 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.49 IAI47_18685 HTH-type transcriptional regulator low > 76
Pantoea agglomerans CFBP13505 P0401 0.74 PagCFBP13505_RS19890 D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH 0.49 PagCFBP13505_RS15720 HTH-type transcriptional regulator low > 74
Erwinia amylovora T8 0.67 OLJFJH_07570 D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH 0.50 OLJFJH_04975 HTH-type transcriptional regulator low > 58

Not shown: 20 genomes with orthologs for GFF4271 only; 0 genomes with orthologs for GFF455 only