Conservation of cofitness between GFF1143 and GFF39 in Sphingobium sp. HT1-2

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF1143 '5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)' transl_table=11 1.0 GFF39 Replication-associated recombination protein RarA 0.69 12
Caulobacter crescentus NA1000 0.49 CCNA_02349 nucleoside phosphorylase 0.60 CCNA_01342 ATPase, AAA family low > 66
Caulobacter crescentus NA1000 Δfur 0.49 CCNA_02349 nucleoside phosphorylase 0.60 CCNA_01342 ATPase, AAA family low > 67
Variovorax sp. OAS795 0.46 ABID97_RS16860 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.44 ABID97_RS07835 replication-associated recombination protein A low > 91
Variovorax sp. SCN45 0.45 GFF327 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) 0.45 GFF6034 Replication-associated recombination protein RarA low > 127
Acidovorax sp. GW101-3H11 0.44 Ac3H11_2430 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) 0.43 Ac3H11_1696 FIG065221: Holliday junction DNA helicase low > 79
Fusobacterium nucleatum SB010 0.17 HUW76_05025 5'-methylthioadenosine/adenosylhomocysteine nucleosidase 0.29 HUW76_02735 replication-associated recombination protein A — —
Mycobacterium tuberculosis H37Rv 0.15 Rv0091 Probable bifunctional MTA/SAH nucleosidase Mtn: 5'-methylthioadenosine nucleosidase (methylthioadenosine methylthioribohydrolase) + S-adenosylhomocysteine nucleosidase (S-adenosyl-L-homocysteine homocysteinylribohydrolase) 0.31 Rv2559c Conserved hypothetical alanine leucine valine rich protein low > 58
Vibrio cholerae E7946 ATCC 55056 0.14 CSW01_12045 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 CSW01_05630 replication-associated recombination protein A — —
Shewanella amazonensis SB2B 0.14 Sama_0855 adenosylhomocysteine nucleosidase (RefSeq) 0.43 Sama_1774 recombination factor protein RarA (RefSeq) — —
Klebsiella pneumoniae MKP103 0.13 KDGMDA_13415 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.42 KDGMDA_17905 replication-associated recombination protein RarA — —
Phocaeicola vulgatus CL09T03C04 0.13 HMPREF1058_RS09990 5'-methylthioadenosine/adenosylhomocysteine nucleosidase 0.39 HMPREF1058_RS06440 replication-associated recombination protein A low > 67
Pectobacterium carotovorum WPP14 0.13 HER17_RS05650 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 HER17_RS12345 replication-associated recombination protein A — —
Phocaeicola dorei CL03T12C01 0.13 ABI39_RS06910 5'-methylthioadenosine/adenosylhomocysteine nucleosidase 0.39 ABI39_RS20200 replication-associated recombination protein A low > 72
Shewanella loihica PV-4 0.13 Shew_1027 methylthioadenosine nucleosidase (RefSeq) 0.41 Shew_2022 recombination factor protein RarA (RefSeq) — —
Bacteroides stercoris CC31F 0.13 HMPREF1181_RS01215 5'-methylthioadenosine/adenosylhomocysteine nucleosidase 0.39 HMPREF1181_RS16975 replication-associated recombination protein A 0.32 39
Pantoea sp. MT58 0.13 IAI47_15570 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 IAI47_12900 replication-associated recombination protein A — —
Pantoea agglomerans CFBP13505 P0401 0.12 PagCFBP13505_RS13435 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 PagCFBP13505_RS04430 replication-associated recombination protein A — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.12 GFF2608 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) 0.37 GFF777 FIG065221: Holliday junction DNA helicase low > 90
Klebsiella michiganensis M5al 0.12 BWI76_RS05170 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.42 BWI76_RS09670 recombination factor protein RarA — —
Erwinia tracheiphila HP pepo 2.2 0.12 IJEDHG_15135 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 IJEDHG_20230 Replication-associated recombination protein A — —
Erwinia tracheiphila SCR3 0.12 LU632_RS20010 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.40 LU632_RS09755 replication-associated recombination protein A — —
Enterobacter asburiae PDN3 0.12 EX28DRAFT_3748 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase — —
Shewanella sp. ANA-3 0.12 Shewana3_3052 methylthioadenosine nucleosidase (RefSeq) 0.41 Shewana3_2052 recombination factor protein RarA (RefSeq) — —
Dickeya dianthicola ME23 0.12 DZA65_RS17095 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.42 DZA65_RS09930 replication-associated recombination protein A — —
Enterobacter sp. TBS_079 0.12 MPMX20_00845 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 MPMX20_01554 Replication-associated recombination protein A — —
Escherichia coli ECRC62 0.11 BNILDI_09060 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 BNILDI_20385 rarA replication-associated recombination protein RarA — —
Ralstonia sp. UNC404CL21Col 0.11 ABZR87_RS16990 5'-methylthioadenosine/adenosylhomocysteine nucleosidase 0.44 ABZR87_RS16030 replication-associated recombination protein A low > 80
Shewanella oneidensis MR-1 0.11 SO1322 pfs 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase (NCBI ptt file) 0.41 SO2308 ATPase, AAA family (NCBI ptt file) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.11 GFF62 '5'-methylthioadenosine nucleosidase (EC 3.2.2.16) / S-adenosylhomocysteine nucleosidase (EC 3.2.2.9)' transl_table=11 0.41 GFF4896 FIG065221: Holliday junction DNA helicase — —
Rahnella sp. WP5 0.10 EX31_RS03180 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.42 EX31_RS18515 replication-associated recombination protein A — —
Cupriavidus basilensis FW507-4G11 0.10 RR42_RS18455 S-adenosylhomocysteine nucleosidase 0.42 RR42_RS04355 recombination factor protein RarA low > 128
Serratia liquefaciens MT49 0.10 IAI46_03575 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 IAI46_08570 replication-associated recombination protein A — —
Ralstonia solanacearum GMI1000 0.10 RS_RS16905 5'-methylthioadenosine/adenosylhomocysteine nucleosidase 0.42 RS_RS11735 replication-associated recombination protein A — —
Paraburkholderia bryophila 376MFSha3.1 0.10 H281DRAFT_04470 adenosylhomocysteine nucleosidase 0.42 H281DRAFT_00180 Recombination protein MgsA low > 103
Ralstonia solanacearum IBSBF1503 0.09 RALBFv3_RS09100 5'-methylthioadenosine/adenosylhomocysteine nucleosidase 0.43 RALBFv3_RS04145 replication-associated recombination protein A — —
Ralstonia solanacearum UW163 0.09 UW163_RS04495 5'-methylthioadenosine/adenosylhomocysteine nucleosidase 0.43 UW163_RS09525 replication-associated recombination protein A — —
Paraburkholderia graminis OAS925 0.09 ABIE53_002937 adenosylhomocysteine nucleosidase 0.44 ABIE53_001292 putative ATPase low > 113
Ralstonia solanacearum PSI07 0.09 RPSI07_RS08170 5'-methylthioadenosine/adenosylhomocysteine nucleosidase 0.44 RPSI07_RS13205 replication-associated recombination protein A low > 81
Escherichia coli HS(pFamp)R (ATCC 700891) 0.08 OHPLBJKB_03503 '5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase' transl_table=11 0.41 OHPLBJKB_02776 Replication-associated recombination protein A — —
Escherichia coli ECRC102 0.08 NIAGMN_08115 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 NIAGMN_03280 rarA replication-associated recombination protein RarA — —
Escherichia coli ECRC100 0.08 OKFHMN_10265 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 OKFHMN_05560 rarA replication-associated recombination protein RarA — —
Escherichia coli ECRC98 0.08 JDDGAC_13860 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 JDDGAC_09370 rarA replication-associated recombination protein RarA — —
Escherichia coli BW25113 0.08 b0159 pfs 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (NCBI) 0.41 b0892 ycaJ recombination protein (NCBI) — —
Escherichia coli ECOR38 0.08 HEPCGN_08215 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 HEPCGN_22950 rarA replication-associated recombination protein RarA — —
Escherichia coli BL21 0.08 ECD_00158 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 ECD_00896 recombination intermediate processing DNA-dependent ATPase — —
Escherichia coli ECRC101 0.08 MCAODC_00780 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 MCAODC_24950 rarA replication-associated recombination protein RarA — —
Escherichia coli ECOR27 0.08 NOLOHH_02610 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 NOLOHH_22130 rarA replication-associated recombination protein RarA — —
Escherichia coli ECRC99 0.08 KEDOAH_17890 mtnN 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 KEDOAH_22175 rarA replication-associated recombination protein RarA — —
Escherichia coli Nissle 1917 0.08 ECOLIN_RS00885 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 ECOLIN_RS04745 replication-associated recombination protein RarA — —
Escherichia fergusonii Becca 0.08 EFB2_03885 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 0.41 EFB2_03169 Replication-associated recombination protein A — —

Not shown: 0 genomes with orthologs for GFF1143 only; 68 genomes with orthologs for GFF39 only