Conservation of cofitness between GFF3044 and GFF3820 in Sphingobium sp. HT1-2

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF3044 Outer membrane protein W precursor 1.0 GFF3820 RNase adapter protein RapZ 0.69 15
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS07105 OmpW family outer membrane protein 0.31 QEN71_RS01735 RNase adapter RapZ low > 153
Azospirillum sp. SherDot2 0.33 MPMX19_04896 Outer membrane protein W 0.40 MPMX19_02622 Nucleotide-binding protein low > 112
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_05175 outer membrane protein 0.30 H281DRAFT_01931 UPF0042 nucleotide-binding protein 0.39 32
Paraburkholderia graminis OAS925 0.32 ABIE53_002375 outer membrane protein 0.30 ABIE53_000714 UPF0042 nucleotide-binding protein low > 113
Azospirillum brasilense Sp245 0.31 AZOBR_RS20245 membrane protein 0.41 AZOBR_RS30485 nucleotide-binding protein low > 97
Pseudomonas sp. SVBP6 0.30 COO64_RS15940 OmpW family protein 0.29 COO64_RS04270 rapZ RNase adapter RapZ 0.54 50
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_4473 OmpW 0.29 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 low > 86
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_4473 OmpW 0.29 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 low > 86
Pseudomonas stutzeri RCH2 0.29 Psest_3571 Outer membrane protein W 0.27 Psest_3316 Predicted P-loop-containing kinase low > 67
Pantoea agglomerans CFBP13505 P0401 0.29 PagCFBP13505_RS02995 outer membrane protein OmpW 0.29 PagCFBP13505_RS09365 RNase adapter RapZ low > 74
Pseudomonas putida KT2440 0.28 PP_0504 Outer membrane protein OprG 0.29 PP_0949 putative ATP-binding protein UPF0042 low > 96
Pantoea sp. MT58 0.28 IAI47_09155 outer membrane protein OmpW 0.29 IAI47_17200 RNase adapter RapZ low > 76
Klebsiella pneumoniae MKP103 0.28 KDGMDA_19485 outer membrane protein OmpW 0.29 KDGMDA_06095 RNase adapter RapZ 0.41 75
Pseudomonas sp. BP01 0.28 JOY50_RS20175 OmpW family protein 0.29 JOY50_RS11115 rapZ RNase adapter RapZ low > 84
Pseudomonas orientalis W4I3 0.28 QF045_RS27280 OmpW family outer membrane protein 0.29 QF045_RS07320 RNase adapter RapZ low > 93
Enterobacter asburiae PDN3 0.28 EX28DRAFT_0927 Outer membrane protein W 0.29 EX28DRAFT_3259 Predicted P-loop-containing kinase low > 76
Erwinia amylovora T8 0.28 OLJFJH_13460 outer membrane protein OmpW 0.30 OLJFJH_07055 RNase adapter RapZ low > 58
Pseudomonas sp. S08-1 0.28 OH686_15635 Outer membrane protein W precursor 0.29 OH686_08560 RNase adapter protein RapZ low > 80
Castellaniella sp019104865 MT123 0.28 ABCV34_RS01650 OmpW family outer membrane protein 0.29 ABCV34_RS14330 RNase adapter RapZ low > 48
Marinobacter adhaerens HP15 0.28 HP15_3604 outer membrane protein OmpW 0.29 HP15_2445 protein yhbJ low > 73
Enterobacter sp. TBS_079 0.27 MPMX20_02571 Outer membrane protein W 0.29 MPMX20_04111 RNase adapter protein RapZ low > 85
Shewanella loihica PV-4 0.27 Shew_2554 outer membrane protein W (RefSeq) 0.29 Shew_3314 hypothetical protein (RefSeq) — —
Dickeya dianthicola 67-19 0.27 HGI48_RS10450 outer membrane protein OmpW 0.30 HGI48_RS01430 RNase adapter RapZ low > 71
Pseudomonas simiae WCS417 0.27 PS417_25315 membrane protein 0.30 PS417_04330 glmZ(sRNA)-inactivating NTPase — —
Pseudomonas lactucae CFBP13502 0.27 GEMAOFIL_05168 Outer membrane protein W 0.29 GEMAOFIL_01072 RNase adapter protein RapZ low > 96
Dickeya dianthicola ME23 0.27 DZA65_RS10930 outer membrane protein OmpW 0.30 DZA65_RS01495 RNase adapter RapZ low > 75
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS26950 outer membrane beta-barrel protein 0.30 PFLU_RS04385 RNase adapter RapZ 0.33 88
Serratia liquefaciens MT49 0.27 IAI46_14055 outer membrane protein OmpW 0.30 IAI46_22485 RNase adapter RapZ low > 87
Pseudomonas fluorescens SBW25 0.27 PFLU_RS26950 outer membrane beta-barrel protein 0.30 PFLU_RS04385 RNase adapter RapZ low > 109
Rahnella sp. WP5 0.27 EX31_RS09990 outer membrane protein OmpW 0.30 EX31_RS12385 RNase adapter RapZ low > 89
Escherichia fergusonii Becca 0.26 EFB2_02669 Outer membrane protein W 0.29 EFB2_00618 RNase adapter protein RapZ low > 86
Escherichia coli Nissle 1917 0.26 ECOLIN_RS07580 outer membrane protein OmpW 0.29 ECOLIN_RS18440 RNase adapter RapZ low > 55
Pseudomonas segetis P6 0.26 ACVTMO_RS04820 OmpW/AlkL family protein 0.28 ACVTMO_RS19135 rapZ RNase adapter RapZ low > 75
Escherichia coli ECRC100 0.26 OKFHMN_28695 ompW outer membrane protein OmpW 0.29 OKFHMN_17925 rapZ RNase adapter RapZ low > 79
Escherichia coli ECRC62 0.26 BNILDI_18500 ompW outer membrane protein OmpW 0.29 BNILDI_01810 rapZ RNase adapter RapZ low > 75
Escherichia coli ECOR38 0.26 HEPCGN_25160 ompW outer membrane protein OmpW 0.29 HEPCGN_16800 rapZ RNase adapter RapZ low > 88
Escherichia coli BL21 0.26 ECD_01230 outer membrane protein W 0.29 ECD_03070 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase low > 61
Escherichia coli ECOR27 0.26 NOLOHH_20355 ompW outer membrane protein OmpW 0.29 NOLOHH_09725 rapZ RNase adapter RapZ low > 76
Dickeya dadantii 3937 0.26 DDA3937_RS10450 outer membrane protein OmpW 0.30 DDA3937_RS01515 RNase adapter RapZ low > 74
Ralstonia sp. UNC404CL21Col 0.26 ABZR87_RS02580 OmpW family protein 0.28 ABZR87_RS07035 RNase adapter RapZ low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.26 OHPLBJKB_02427 Outer membrane protein W 0.29 OHPLBJKB_00495 RNase adapter protein RapZ low > 74
Klebsiella michiganensis M5al 0.26 BWI76_RS11810 outer membrane protein OmpW 0.30 BWI76_RS25280 RNase adaptor protein RapZ low > 92
Escherichia coli BW25113 0.26 b1256 ompW outer membrane protein W (NCBI) 0.29 b3205 yhbJ hypothetical protein (NCBI) low > 76
Escherichia coli ECRC98 0.26 JDDGAC_05880 ompW outer membrane protein OmpW 0.29 JDDGAC_21550 rapZ RNase adapter RapZ low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF2731 Outer membrane protein W precursor 0.29 GFF2949 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 78
Escherichia coli ECRC99 0.26 KEDOAH_25690 ompW outer membrane protein OmpW 0.29 KEDOAH_10225 rapZ RNase adapter RapZ — —
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_18465 outer membrane protein W 0.31 CSW01_12830 RNase adaptor protein RapZ low > 62
Escherichia coli ECRC101 0.26 MCAODC_21565 ompW outer membrane protein OmpW 0.29 MCAODC_08445 rapZ RNase adapter RapZ low > 87
Escherichia coli ECRC102 0.26 NIAGMN_27540 ompW outer membrane protein OmpW 0.29 NIAGMN_15685 rapZ RNase adapter RapZ low > 80
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_1302 Outer membrane protein W precursor 0.29 PfGW456L13_5017 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 87
Pseudomonas aeruginosa MRSN321 0.26 DY961_RS27800 oprG;inference=COORDINATES outer membrane protein OprG 0.29 DY961_RS24150 rapZ;go_function=ATP RNase adapter RapZ low > 100
Lysobacter sp. OAE881 0.26 ABIE51_RS17100 OmpW family outer membrane protein 0.31 ABIE51_RS15975 RNase adapter RapZ low > 62
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_06765 hypothetical protein 0.29 AO353_05195 glmZ(sRNA)-inactivating NTPase low > 101
Shewanella sp. ANA-3 0.26 Shewana3_2775 outer membrane protein W (RefSeq) 0.31 Shewana3_0669 hypothetical protein (RefSeq) low > 73
Pseudomonas aeruginosa PA14 0.26 IKLFDK_20960 outer membrane protein OprG 0.29 IKLFDK_01755 RNase adapter RapZ low > 98
Pseudomonas aeruginosa PUPa3 0.26 DQ20_RS47850 oprG;inference=COORDINATES outer membrane protein OprG 0.29 DQ20_RS56610 rapZ;go_function=ATP RNase adapter RapZ low > 101
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS16010 membrane protein 0.25 HSERO_RS19535 nucleotide-binding protein low > 78
Pseudomonas sp. DMC3 0.25 GFF3814 Outer membrane protein W 0.29 GFF1825 RNase adapter protein RapZ low > 89
Alteromonas macleodii MIT1002 0.25 MIT1002_00027 Outer membrane protein W precursor 0.29 MIT1002_00824 glmZ(sRNA)-inactivating NTPase low > 70
Kangiella aquimarina DSM 16071 0.25 B158DRAFT_2223 Outer membrane protein W 0.30 B158DRAFT_2077 Predicted P-loop-containing kinase low > 40
Pectobacterium carotovorum WPP14 0.25 HER17_RS10950 outer membrane protein OmpW 0.29 HER17_RS20075 RNase adapter RapZ low > 75
Shewanella amazonensis SB2B 0.25 Sama_1371 outer membrane protein W (RefSeq) 0.29 Sama_3091 hypothetical protein (RefSeq) low > 62
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.1234.1 Outer membrane protein W precursor 0.33 Xcc-8004.1658.1 hypothetical protein low > 74
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_2639 Outer membrane protein W precursor 0.29 Pf1N1B4_1083 Hypothetical ATP-binding protein UPF0042, contains P-loop — —
Methylophilus sp. DMC18 0.24 GFF591 Outer membrane protein W 0.27 GFF2266 RNase adapter protein RapZ low > 43
Pseudomonas sp. RS175 0.24 PFR28_03959 Outer membrane protein W 0.29 PFR28_00170 RNase adapter protein RapZ 0.50 21
Shewanella oneidensis MR-1 0.24 SO1673 outer membrane protein OmpW, putative (NCBI ptt file) 0.31 SO3964 conserved hypothetical protein (NCBI ptt file) low > 76
Ralstonia solanacearum UW163 0.24 UW163_RS06690 OmpW family protein 0.28 UW163_RS02435 RNase adapter RapZ — —
Ralstonia solanacearum IBSBF1503 0.24 RALBFv3_RS06925 OmpW family protein 0.28 RALBFv3_RS11145 RNase adapter RapZ low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.24 GFF1690 Outer membrane protein W precursor 0.27 GFF828 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 90
Cupriavidus basilensis FW507-4G11 0.24 RR42_RS21200 membrane protein 0.25 RR42_RS02060 nucleotide-binding protein low > 128
Ralstonia solanacearum PSI07 0.24 RPSI07_RS10310 OmpW family protein 0.28 RPSI07_RS22155 RNase adapter RapZ low > 81
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_14880 hypothetical protein 0.29 AO356_07050 glmZ(sRNA)-inactivating NTPase low > 104
Ralstonia solanacearum GMI1000 0.24 RS_RS14870 OmpW family protein 0.28 RS_RS01995 RNase adaptor protein RapZ low > 80
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_4909 Outer membrane protein W precursor 0.29 Pf6N2E2_3270 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 103
Acidovorax sp. GW101-3H11 0.24 Ac3H11_541 Outer membrane protein W precursor 0.25 Ac3H11_3459 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 79
Dinoroseobacter shibae DFL-12 0.22 Dshi_1299 OmpW family protein (RefSeq) 0.39 Dshi_0209 hypothetical protein (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.20 PGA1_c10290 outer membrane protein 0.37 PGA1_c01180 Predicted P-loop-containing kinase low > 62
Acinetobacter baumannii LAC-4 0.12 RR41_RS17510 outer membrane beta-barrel protein 0.28 RR41_RS16040 RNase adapter RapZ — —

Not shown: 6 genomes with orthologs for GFF3044 only; 20 genomes with orthologs for GFF3820 only