Conservation of cofitness between GFF2365 and GFF3749 in Sphingobium sp. HT1-2

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF2365 NADH:flavin oxidoreductase/NADH oxidase 1.0 GFF3749 7-cyano-7-deazaguanine synthase (EC 6.3.4.20) low > 95
Rhodopseudomonas palustris CGA009 0.69 TX73_006725 NADH:flavin oxidoreductase/NADH oxidase 0.24 TX73_014550 7-cyano-7-deazaguanine synthase QueC low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.67 A4249_RS03505 NADH:flavin oxidoreductase/NADH oxidase 0.24 A4249_RS08700 7-cyano-7-deazaguanine synthase QueC — —
Rhodospirillum rubrum S1H 0.65 Rru_A0144 NADH:flavin oxidoreductase/NADH oxidase (NCBI) 0.51 Rru_A1957 ExsB (NCBI) low > 58
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS13720 oxidoreductase 0.53 RR42_RS15445 7-cyano-7-deazaguanine synthase low > 128
Rahnella sp. WP5 0.64 EX31_RS24330 NADH:flavin oxidoreductase/NADH oxidase 0.24 EX31_RS22280 7-cyano-7-deazaguanine synthase QueC low > 89
Bosea sp. OAE506 0.63 ABIE41_RS20155 NADH:flavin oxidoreductase/NADH oxidase 0.25 ABIE41_RS11340 7-cyano-7-deazaguanine synthase QueC low > 77
Variovorax sp. SCN45 0.62 GFF5180 NADH:flavin oxidoreductases, Old Yellow Enzyme family 0.23 GFF5214 7-cyano-7-deazaguanine synthase (EC 6.3.4.20) low > 127
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.392.1 FMN oxidoreductase 0.54 Xcc-8004.1450.1 Queuosine Biosynthesis QueC ATPase low > 74
Xanthobacter sp. DMC5 0.62 GFF2717 NADPH dehydrogenase 0.22 GFF3831 7-cyano-7-deazaguanine synthase — —
Pantoea sp. MT58 0.61 IAI47_09960 NADH:flavin oxidoreductase/NADH oxidase 0.24 IAI47_14620 7-cyano-7-deazaguanine synthase QueC low > 76
Serratia liquefaciens MT49 0.61 IAI46_09680 NADH:flavin oxidoreductase/NADH oxidase 0.25 IAI46_05045 7-cyano-7-deazaguanine synthase QueC low > 86
Pantoea agglomerans CFBP13505 P0401 0.60 PagCFBP13505_RS06200 NADH:flavin oxidoreductase/NADH oxidase 0.23 PagCFBP13505_RS10575 7-cyano-7-deazaguanine synthase QueC low > 74
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_02365 2,4-dienoyl-CoA reductase 0.21 H281DRAFT_02232 preQ(0) biosynthesis protein QueC low > 103
Paraburkholderia graminis OAS925 0.59 ABIE53_000285 2,4-dienoyl-CoA reductase-like NADH-dependent reductase (Old Yellow Enzyme family) 0.22 ABIE53_000396 7-cyano-7-deazaguanine synthase low > 113
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS29455 NADH:flavin oxidoreductase/NADH oxidase 0.21 QEN71_RS00200 7-cyano-7-deazaguanine synthase QueC low > 153
Dechlorosoma suillum PS 0.59 Dsui_0427 NADH:flavin oxidoreductase 0.48 Dsui_0549 queuosine biosynthesis protein QueC low > 51
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS19550 oxidoreductase 0.22 BPHYT_RS01500 7-cyano-7-deazaguanine synthase low > 109
Pectobacterium carotovorum WPP14 0.58 HER17_RS08565 NADH:flavin oxidoreductase/NADH oxidase 0.23 HER17_RS15815 7-cyano-7-deazaguanine synthase QueC low > 75
Klebsiella pneumoniae MKP103 0.57 KDGMDA_22230 oxidoreductase 0.24 KDGMDA_14645 7-cyano-7-deazaguanine synthase QueC low > 95
Dickeya dadantii 3937 0.57 DDA3937_RS13200 NADH:flavin oxidoreductase/NADH oxidase 0.24 DDA3937_RS05670 7-cyano-7-deazaguanine synthase QueC low > 74
Dickeya dianthicola 67-19 0.57 HGI48_RS13265 NADH:flavin oxidoreductase/NADH oxidase 0.25 HGI48_RS05715 7-cyano-7-deazaguanine synthase QueC low > 71
Dickeya dianthicola ME23 0.57 DZA65_RS13740 NADH:flavin oxidoreductase/NADH oxidase 0.24 DZA65_RS06040 7-cyano-7-deazaguanine synthase QueC low > 75
Ralstonia solanacearum PSI07 0.57 RPSI07_RS20510 NADH:flavin oxidoreductase/NADH oxidase 0.54 RPSI07_RS20285 7-cyano-7-deazaguanine synthase QueC low > 81
Ralstonia solanacearum UW163 0.56 UW163_RS00815 NADH:flavin oxidoreductase/NADH oxidase 0.54 UW163_RS00625 7-cyano-7-deazaguanine synthase QueC — —
Ralstonia solanacearum IBSBF1503 0.56 RALBFv3_RS12750 NADH:flavin oxidoreductase/NADH oxidase 0.54 RALBFv3_RS12940 7-cyano-7-deazaguanine synthase QueC low > 76
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS08800 NADH:flavin oxidoreductase/NADH oxidase 0.53 ABZR87_RS09000 7-cyano-7-deazaguanine synthase QueC low > 80
Ralstonia solanacearum GMI1000 0.55 RS_RS03530 NADH:flavin oxidoreductase/NADH oxidase 0.53 RS_RS03715 7-cyano-7-deazaguanine synthase low > 80
Acinetobacter radioresistens SK82 0.54 MPMX26_02484 NADPH dehydrogenase 0.45 MPMX26_02175 7-cyano-7-deazaguanine synthase low > 36
Acinetobacter baumannii LAC-4 0.54 RR41_RS03340 NADH:flavin oxidoreductase/NADH oxidase 0.45 RR41_RS04750 7-cyano-7-deazaguanine synthase QueC low > 55
Magnetospirillum magneticum AMB-1 0.49 AMB_RS14545 NADH:flavin oxidoreductase/NADH oxidase 0.54 AMB_RS20345 7-cyano-7-deazaguanine synthase low > 64
Lysobacter sp. OAE881 0.48 ABIE51_RS10340 oxidoreductase 0.53 ABIE51_RS05105 7-cyano-7-deazaguanine synthase QueC low > 62
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS17215 oxidoreductase 0.19 HSERO_RS20880 7-cyano-7-deazaguanine synthase low > 78
Rhodanobacter denitrificans MT42 0.44 LRK55_RS14500 NADH:flavin oxidoreductase/NADH oxidase 0.55 LRK55_RS04635 7-cyano-7-deazaguanine synthase QueC low > 63
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS00545 NADH:flavin oxidoreductase/NADH oxidase 0.54 ABZR86_RS10785 7-cyano-7-deazaguanine synthase QueC low > 74
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS14785 NADH:flavin oxidoreductase/NADH oxidase 0.55 LRK54_RS04855 7-cyano-7-deazaguanine synthase QueC low > 59
Rhodanobacter sp000427505 FW510-R12 0.44 LRK53_RS13810 NADH:flavin oxidoreductase/NADH oxidase 0.55 LRK53_RS05175 7-cyano-7-deazaguanine synthase QueC low > 59
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_1299 NADH:flavin oxidoreductase/NADH oxidase 0.53 Psyr_1419 preQ(0) biosynthesis protein QueC low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_1299 NADH:flavin oxidoreductase/NADH oxidase 0.53 Psyr_1419 preQ(0) biosynthesis protein QueC low > 86
Pseudomonas stutzeri RCH2 0.44 Psest_1546 NADH:flavin oxidoreductases, Old Yellow Enzyme family 0.55 Psest_1506 queuosine biosynthesis protein QueC low > 67
Pseudomonas aeruginosa PA14 0.44 IKLFDK_19005 oxidoreductase 0.53 IKLFDK_04420 7-cyano-7-deazaguanine synthase QueC low > 100
Rhodanobacter sp. FW510-T8 0.43 OKGIIK_03610 fadH oxidoreductase 0.56 OKGIIK_01895 queC 7-cyano-7-deazaguanine synthase QueC low > 53
Pseudomonas putida KT2440 0.43 PP_1478 putative Xenobiotic reductase 0.54 PP_1226 pre-queuosine 0 synthase low > 96
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_04315 oxidoreductase 0.54 AO353_03535 7-cyano-7-deazaguanine synthase low > 101
Pseudomonas sp. SVBP6 0.43 COO64_RS04985 NADH:flavin oxidoreductase/NADH oxidase 0.53 COO64_RS20145 queC 7-cyano-7-deazaguanine synthase QueC low > 93
Pseudomonas sp. DMC3 0.42 GFF1997 NADPH dehydrogenase 0.53 GFF5175 7-cyano-7-deazaguanine synthase low > 89
Pseudomonas sp. BP01 0.42 JOY50_RS11750 NADH:flavin oxidoreductase/NADH oxidase 0.53 JOY50_RS01770 queC 7-cyano-7-deazaguanine synthase QueC low > 84
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1731 NADH:flavin oxidoreductases, Old Yellow Enzyme family 0.52 PfGW456L13_1862 Queuosine Biosynthesis QueC ATPase low > 87
Pseudomonas sp. RS175 0.42 PFR28_00340 NADPH dehydrogenase 0.54 PFR28_03403 7-cyano-7-deazaguanine synthase low > 88
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_3136 NADH:flavin oxidoreductases, Old Yellow Enzyme family 0.55 Pf6N2E2_5546 Queuosine Biosynthesis QueC ATPase low > 103
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_06340 oxidoreductase 0.55 AO356_18070 7-cyano-7-deazaguanine synthase low > 104
Pseudomonas simiae WCS417 0.42 PS417_05890 oxidoreductase 0.54 PS417_22400 7-cyano-7-deazaguanine synthase — —
Pseudomonas fluorescens SBW25 0.42 PFLU_RS05960 NADH:flavin oxidoreductase/NADH oxidase 0.54 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC low > 109
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS05960 NADH:flavin oxidoreductase/NADH oxidase 0.54 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC low > 109
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_3021 NADH:flavin oxidoreductases, Old Yellow Enzyme family 0.54 Pf1N1B4_628 Queuosine Biosynthesis QueC ATPase low > 87
Pseudomonas lactucae CFBP13502 0.41 GEMAOFIL_01349 NADPH dehydrogenase 0.25 GEMAOFIL_04820 7-cyano-7-deazaguanine synthase low > 93
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2880 NADH:flavin oxidoreductases, Old Yellow Enzyme family 0.73 Ga0059261_3209 queuosine biosynthesis protein QueC low > 68
Shewanella amazonensis SB2B 0.18 Sama_0007 oxidoreductase, FAD/FMN-binding (RefSeq) 0.23 Sama_1826 ExsB protein (RefSeq) low > 62
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_2977 NADH:flavin oxidoreductase/NADH oxidase (RefSeq) 0.21 DvMF_1125 exsB protein (RefSeq) low > 51
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS15680 NADH:flavin oxidoreductase 0.19 HMPREF1078_RS14060 7-cyano-7-deazaguanine synthase QueC low > 61
Caulobacter crescentus NA1000 Δfur 0.15 CCNA_03179 NADH-dependent flavin oxidoreductase 0.23 CCNA_03262 queuosine biosynthesis protein QueC low > 67
Caulobacter crescentus NA1000 0.15 CCNA_03179 NADH-dependent flavin oxidoreductase 0.23 CCNA_03262 queuosine biosynthesis protein QueC low > 66
Bacteroides stercoris CC31F 0.14 HMPREF1181_RS08285 NADH:flavin oxidoreductase 0.22 HMPREF1181_RS11150 7-cyano-7-deazaguanine synthase QueC low > 56

Not shown: 7 genomes with orthologs for GFF2365 only; 47 genomes with orthologs for GFF3749 only