Conservation of cofitness between GFF2073 and GFF3641 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2073 Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7) 1.0 GFF3641 Endonuclease III (EC 4.2.99.18) 0.39 8
Escherichia coli ECRC98 0.99 JDDGAC_26020 eutB ethanolamine ammonia-lyase subunit alpha 0.97 JDDGAC_02115 nth endonuclease III low > 87
Escherichia coli BW25113 0.99 b2441 eutB ethanolamine ammonia-lyase, heavy chain (VIMSS) 0.97 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) low > 76
Escherichia coli ECRC100 0.99 OKFHMN_22070 eutB ethanolamine ammonia-lyase subunit alpha 0.97 OKFHMN_27525 nth endonuclease III low > 79
Escherichia coli ECRC102 0.99 NIAGMN_19840 eutB ethanolamine ammonia-lyase subunit alpha 0.97 NIAGMN_00540 nth endonuclease III low > 80
Escherichia coli ECOR27 0.99 NOLOHH_13750 eutB ethanolamine ammonia-lyase subunit alpha 0.97 NOLOHH_18045 nth endonuclease III — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_01281 Ethanolamine ammonia-lyase heavy chain 0.97 OHPLBJKB_02093 Endonuclease III low > 74
Escherichia coli BL21 0.99 ECD_02341 ethanolamine ammonia-lyase, large subunit, heavy chain 0.97 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) — —
Escherichia fergusonii Becca 0.99 EFB2_01438 Ethanolamine ammonia-lyase heavy chain 0.97 EFB2_02359 Endonuclease III low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS13990 ethanolamine ammonia-lyase subunit alpha 0.97 ECOLIN_RS09110 endonuclease III — —
Escherichia coli ECRC99 0.98 KEDOAH_06150 eutB ethanolamine ammonia-lyase subunit alpha 0.97 KEDOAH_00580 nth endonuclease III — —
Escherichia coli ECRC101 0.98 MCAODC_12600 eutB ethanolamine ammonia-lyase subunit alpha 0.97 MCAODC_17885 nth endonuclease III low > 88
Klebsiella michiganensis M5al 0.97 BWI76_RS20765 ethanolamine ammonia lyase large subunit 0.96 BWI76_RS16385 endonuclease III — —
Klebsiella pneumoniae MKP103 0.97 KDGMDA_27600 ethanolamine ammonia-lyase subunit alpha 0.95 KDGMDA_23325 endonuclease III low > 95
Escherichia coli ECOR38 0.89 HEPCGN_21245 eutB ethanolamine ammonia-lyase subunit alpha 0.97 HEPCGN_05910 nth endonuclease III low > 88
Fusobacterium nucleatum SB010 0.58 HUW76_00390 ethanolamine ammonia-lyase subunit EutB 0.40 HUW76_00260 endonuclease III low > 35
Paraburkholderia graminis OAS925 0.51 ABIE53_000360 ethanolamine ammonia-lyase large subunit 0.69 ABIE53_001423 endonuclease-3 low > 113
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_02302 Ethanolamine ammonia-lyase heavy chain 0.70 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III low > 103
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS00105 ethanolamine ammonia lyase large subunit 0.69 BPHYT_RS06080 endonuclease IV low > 109
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS00035 ethanolamine ammonia-lyase subunit EutB 0.67 QEN71_RS24560 endonuclease III low > 153
Methylophilus sp. DMC18 0.49 GFF1522 Ethanolamine ammonia-lyase heavy chain 0.64 GFF1728 Endonuclease III low > 43
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS12580 ethanolamine ammonia lyase large subunit 0.73 HSERO_RS08070 endonuclease IV low > 78
Variovorax sp. OAS795 0.49 ABID97_RS19510 ethanolamine ammonia-lyase subunit EutB 0.63 ABID97_RS17315 endonuclease III low > 91
Pseudomonas stutzeri RCH2 0.49 Psest_0669 Ethanolamine ammonia-lyase, large subunit 0.71 Psest_3118 endonuclease III low > 67
Acinetobacter radioresistens SK82 0.49 MPMX26_01770 Ethanolamine ammonia-lyase heavy chain 0.74 MPMX26_02306 Endonuclease III — —
Variovorax sp. SCN45 0.49 GFF6450 Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7) 0.63 GFF418 Endonuclease III (EC 4.2.99.18) low > 127
Pseudomonas lactucae CFBP13502 0.49 GEMAOFIL_05119 Ethanolamine ammonia-lyase heavy chain 0.73 GEMAOFIL_01318 Endonuclease III low > 93
Pseudomonas putida KT2440 0.48 PP_0543 ethanolamine ammonia-lyase, alpha-subunit 0.73 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites low > 96
Marinobacter adhaerens HP15 0.48 HP15_4083 ethanolamine ammonia-lyase heavy chain 0.78 HP15_1285 endonuclease III low > 73
Pseudomonas fluorescens SBW25-INTG 0.48 PFLU_RS26755 ethanolamine ammonia-lyase subunit EutB 0.73 PFLU_RS05740 endonuclease III low > 109
Pseudomonas fluorescens SBW25 0.48 PFLU_RS26755 ethanolamine ammonia-lyase subunit EutB 0.73 PFLU_RS05740 endonuclease III low > 109
Pseudomonas fluorescens FW300-N2E3 0.48 AO353_06570 ethanolamine ammonia-lyase 0.75 AO353_04085 endonuclease III low > 101
Pseudomonas sp. SVBP6 0.48 COO64_RS15705 ethanolamine ammonia-lyase subunit EutB 0.73 COO64_RS16885 nth endonuclease III low > 93
Pseudomonas simiae WCS417 0.48 PS417_24820 ethanolamine ammonia-lyase 0.72 PS417_05655 endonuclease III low > 88
Pseudomonas sp. BP01 0.48 JOY50_RS23055 ethanolamine ammonia-lyase subunit EutB 0.72 JOY50_RS23995 nth endonuclease III low > 84
Pseudomonas syringae pv. syringae B728a 0.48 Psyr_0628 Ethanolamine ammonia-lyase heavy chain 0.74 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.48 Psyr_0628 Ethanolamine ammonia-lyase heavy chain 0.74 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase low > 86
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_1340 Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7) 0.75 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) low > 87
Pseudomonas sp. RS175 0.48 PFR28_03887 Ethanolamine ammonia-lyase heavy chain 0.73 PFR28_03349 Endonuclease III low > 88
Pseudomonas fluorescens FW300-N2C3 0.48 AO356_15215 ethanolamine ammonia-lyase 0.74 AO356_18345 endonuclease III low > 104
Pseudomonas sp. S08-1 0.48 OH686_07695 Ethanolamine ammonia-lyase heavy chain 0.74 OH686_03910 endonuclease III low > 80
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_4977 Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7) 0.75 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) low > 103
Pseudomonas aeruginosa PA14 0.48 IKLFDK_20750 ethanolamine ammonia lyase large subunit 0.73 IKLFDK_17935 endonuclease III low > 100
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_2671 Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7) 0.76 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) low > 87
Pseudomonas sp. DMC3 0.48 GFF3856 Ethanolamine ammonia-lyase heavy chain 0.75 GFF5088 Endonuclease III low > 89
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS21320 ethanolamine ammonia-lyase 0.70 RR42_RS05970 endonuclease III low > 128
Acinetobacter baumannii LAC-4 0.47 RR41_RS07155 ethanolamine ammonia-lyase subunit EutB 0.69 RR41_RS09045 endonuclease III low > 55
Pseudomonas segetis P6 0.47 MPMX49_02151 Ethanolamine ammonia-lyase heavy chain 0.71 MPMX49_01452 Endonuclease III low > 75
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS19845 ethanolamine ammonia-lyase subunit EutB 0.71 ABZR87_RS09915 endonuclease III low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.47 GFF2599 Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7) 0.63 GFF4003 Endonuclease III (EC 4.2.99.18) low > 90
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.2299.1 Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7) 0.72 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) low > 74
Bosea sp. OAE506 0.47 ABIE41_RS01730 ethanolamine ammonia-lyase subunit EutB 0.56 ABIE41_RS03410 endonuclease III low > 77
Azospirillum sp. SherDot2 0.47 MPMX19_05703 Ethanolamine ammonia-lyase heavy chain 0.60 MPMX19_02500 Endonuclease III low > 112
Ralstonia solanacearum PSI07 0.46 RPSI07_RS09470 ethanolamine ammonia-lyase subunit EutB 0.72 RPSI07_RS19265 endonuclease III low > 81
Azospirillum brasilense Sp245 0.46 AZOBR_RS27745 ethanolamine ammonia lyase large subunit 0.60 AZOBR_RS01565 endonuclease III low > 97
Ralstonia solanacearum GMI1000 0.46 RS_RS15710 ethanolamine ammonia-lyase subunit EutB 0.71 RS_RS04975 endonuclease III low > 80
Rhodospirillum rubrum S1H 0.45 Rru_A1032 Ethanolamine ammonia lyase large subunit (NCBI) 0.56 Rru_A0153 Endonuclease III/Nth (NCBI) low > 58
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS07810 ethanolamine ammonia lyase large subunit 0.71 RALBFv3_RS14195 endonuclease III low > 76
Ralstonia solanacearum UW163 0.44 UW163_RS05815 ethanolamine ammonia lyase large subunit 0.71 UW163_RS11660 endonuclease III — —
Rahnella sp. WP5 0.44 EX31_RS20125 ethanolamine ammonia-lyase subunit EutB 0.89 EX31_RS06590 endonuclease III low > 89
Serratia liquefaciens MT49 0.43 IAI46_18400 ethanolamine ammonia-lyase subunit EutB 0.89 IAI46_11455 endonuclease III low > 86

Not shown: 3 genomes with orthologs for GFF2073 only; 51 genomes with orthologs for GFF3641 only