Conservation of cofitness between GFF2485 and GFF1673 in Sphingobium sp. HT1-2

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF2485 Outer membrane porin, OmpA family 1.0 GFF1673 DNA-binding protein HU-beta 0.66 9
Sphingomonas koreensis DSMZ 15582 0.57 Ga0059261_1444 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 0.87 Ga0059261_0103 Bacterial nucleoid DNA-binding protein — —
Pseudomonas stutzeri RCH2 0.38 Psest_3218 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 0.59 Psest_2284 Bacterial nucleoid DNA-binding protein — —
Sinorhizobium meliloti 1021 0.37 SMc00354 hypothetical protein 0.65 SMc01906 histone-like protein — —
Klebsiella pneumoniae MKP103 0.37 KDGMDA_07665 OmpA family lipoprotein 0.54 KDGMDA_14625 DNA-binding protein HU-beta low > 95
Rhizobium sp. OAE497 0.37 ABIE40_RS11645 OmpA family protein 0.55 ABIE40_RS07105 DNA-binding protein HupB low > 107
Escherichia fergusonii Becca 0.37 EFB2_00255 putative lipoprotein YiaD 0.56 EFB2_03617 DNA-binding protein HU-beta low > 86
Klebsiella michiganensis M5al 0.36 BWI76_RS26935 OmpA family lipoprotein 0.54 BWI76_RS06540 DNA-binding protein HU-beta low > 92
Escherichia coli BL21 0.36 ECD_03402 multicopy suppressor of bamB; outer membrane lipoprotein 0.56 ECD_00392 HU, DNA-binding transcriptional regulator, beta subunit 0.52 10
Alteromonas macleodii MIT1002 0.36 MIT1002_04106 Inner membrane lipoprotein YiaD precursor 0.57 MIT1002_02756 hypothetical protein — —
Escherichia coli ECRC98 0.36 JDDGAC_19655 yiaD OmpA family lipoprotein 0.55 JDDGAC_11970 hupB DNA-binding protein HU-beta low > 87
Escherichia coli ECRC102 0.36 NIAGMN_13785 yiaD OmpA family lipoprotein 0.55 NIAGMN_06370 hupB DNA-binding protein HU-beta low > 80
Escherichia coli ECOR27 0.36 NOLOHH_07970 yiaD OmpA family lipoprotein 0.55 NOLOHH_01250 hupB DNA-binding protein HU-beta low > 76
Escherichia coli ECRC62 0.36 BNILDI_03575 yiaD OmpA family lipoprotein 0.55 BNILDI_22665 hupB DNA-binding protein HU-beta low > 75
Escherichia coli ECRC100 0.36 OKFHMN_16025 yiaD OmpA family lipoprotein 0.55 OKFHMN_08315 hupB DNA-binding protein HU-beta low > 79
Escherichia coli Nissle 1917 0.36 ECOLIN_RS20325 OmpA family lipoprotein 0.54 ECOLIN_RS02640 nucleoid-associated protein HU-beta low > 55
Escherichia coli ECRC99 0.36 KEDOAH_12125 yiaD OmpA family lipoprotein 0.55 KEDOAH_19650 hupB DNA-binding protein HU-beta — —
Escherichia coli ECRC101 0.36 MCAODC_06540 yiaD OmpA family lipoprotein 0.55 MCAODC_27540 hupB DNA-binding protein HU-beta low > 87
Escherichia coli ECOR38 0.36 HEPCGN_14915 yiaD OmpA family lipoprotein 0.55 HEPCGN_06930 hupB DNA-binding protein HU-beta low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00154 putative lipoprotein YiaD 0.56 OHPLBJKB_03233 DNA-binding protein HU-beta low > 74
Escherichia coli BW25113 0.36 b3552 yiaD predicted outer membrane lipoprotien (NCBI) 0.56 b0440 hupB HU, DNA-binding transcriptional regulator, beta subunit (NCBI) low > 76
Caulobacter crescentus NA1000 Δfur 0.36 CCNA_00201 outer membrane protein 0.52 CCNA_02036 DNA-binding protein HU low > 67
Caulobacter crescentus NA1000 0.36 CCNA_00201 outer membrane protein 0.52 CCNA_02036 DNA-binding protein HU low > 66
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF459 Outer membrane protein A precursor 0.55 GFF4356 DNA-binding protein HU-beta low > 78
Pantoea sp. MT58 0.35 IAI47_00140 OmpA family lipoprotein 0.54 IAI47_14640 DNA-binding protein HU-beta low > 76
Agrobacterium fabrum C58 0.35 Atu2722 porin 0.56 Atu1262 histone-like protein — —
Enterobacter asburiae PDN3 0.35 EX28DRAFT_3812 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 0.54 EX28DRAFT_2530 Bacterial nucleoid DNA-binding protein low > 76
Pantoea agglomerans CFBP13505 P0401 0.35 PagCFBP13505_RS19200 OmpA family lipoprotein 0.53 PagCFBP13505_RS10555 DNA-binding protein HU-beta low > 74
Enterobacter sp. TBS_079 0.35 MPMX20_00182 putative lipoprotein YiaD 0.54 MPMX20_01031 DNA-binding protein HU-beta low > 85
Rahnella sp. WP5 0.35 EX31_RS05890 OmpA family lipoprotein 0.55 EX31_RS22260 DNA-binding protein HU-beta low > 89
Pseudomonas segetis P6 0.35 ACVTMO_RS18275 OmpA family protein 0.52 ACVTMO_RS00495 HU family DNA-binding protein low > 75
Shewanella amazonensis SB2B 0.34 Sama_3096 OmpA family protein (RefSeq) 0.56 Sama_3158 histone-like DNA-binding protein (RefSeq) low > 62
Serratia liquefaciens MT49 0.34 IAI46_00110 OmpA family lipoprotein 0.54 IAI46_05025 DNA-binding protein HU-beta low > 87
Marinobacter adhaerens HP15 0.33 HP15_2555 OmpA/MotB domain protein 0.61 HP15_2182 histone-like bacterial DNA-binding protein — —
Shewanella oneidensis MR-1 0.33 SO3969 OmpA family protein (NCBI ptt file) 0.54 SO1797 DNA-binding protein, HU family (NCBI ptt file) — —
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_2386 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 0.60 B158DRAFT_1039 Bacterial nucleoid DNA-binding protein low > 40
Acinetobacter baumannii LAC-4 0.32 RR41_RS14865 OmpA family protein 0.65 RR41_RS12365 HU family DNA-binding protein — —
Erwinia amylovora T8 0.32 OLJFJH_05070 OmpA family lipoprotein 0.53 OLJFJH_06770 DNA-binding protein HU-alpha — —
Shewanella sp. ANA-3 0.32 Shewana3_0665 OmpA/MotB domain-containing protein (RefSeq) 0.53 Shewana3_0547 histone family protein DNA-binding protein (RefSeq) low > 73
Pseudomonas sp. S08-1 0.31 OH686_06290 Outer membrane porin, OmpA family 0.58 OH686_03630 DNA-binding protein HU-beta — —
Shewanella loihica PV-4 0.31 Shew_0908 OmpA/MotB domain-containing protein (RefSeq) 0.53 Shew_0430 histone family protein DNA-binding protein (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_06045 lipoprotein 0.56 CSW01_01405 DNA-binding protein HU-alpha low > 62
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS16015 membrane protein 0.49 RR42_RS28955 transcriptional regulator low > 128
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_1005 OmpA/MotB 0.59 Psyr_1750 bacterial nucleoid protein HU beta subunit — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_1005 OmpA/MotB 0.59 Psyr_1750 bacterial nucleoid protein HU beta subunit — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.23 GFF286 Outer membrane lipoprotein omp16 precursor 0.52 GFF3853 DNA-binding protein HU-beta — —

Not shown: 4 genomes with orthologs for GFF2485 only; 65 genomes with orthologs for GFF1673 only