Conservation of cofitness between Psest_1542 and Psest_1540 in Pseudomonas stutzeri RCH2

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_1542 Uncharacterized proteins, homologs of lactam utilization protein B 1.0 Psest_1540 biotin-dependent carboxylase uncharacterized domain 0.33 3
Pseudomonas segetis P6 0.83 MPMX49_01595 5-oxoprolinase subunit A 3 0.71 MPMX49_01593 5-oxoprolinase subunit C low > 75
Pseudomonas sp. SVBP6 0.75 COO64_RS22245 5-oxoprolinase subunit PxpA 0.58 COO64_RS22235 biotin-dependent carboxyltransferase family protein low > 93
Pseudomonas sp. RS175 0.75 PFR28_00728 5-oxoprolinase subunit A 3 0.57 PFR28_00730 5-oxoprolinase subunit C 0.70 2
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_4478 Lactam utilization protein LamB 0.58 PfGW456L13_4476 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) 0.40 51
Pseudomonas orientalis W4I3 0.74 QF045_RS10120 5-oxoprolinase subunit PxpA 0.59 QF045_RS10130 biotin-dependent carboxyltransferase family protein low > 93
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_04335 hypothetical protein 0.57 AO356_04325 allophanate hydrolase 0.76 2
Pseudomonas lactucae CFBP13502 0.74 GEMAOFIL_01627 5-oxoprolinase subunit A 3 0.58 GEMAOFIL_01629 5-oxoprolinase subunit C low > 96
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_17995 hypothetical protein 0.60 AO353_18005 allophanate hydrolase 0.50 1
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_3366 Lactam utilization protein LamB 0.57 Pf1N1B4_3368 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) low > 87
Pseudomonas fluorescens SBW25 0.74 PFLU_RS07555 LamB/YcsF family protein 0.59 PFLU_RS07565 biotin-dependent carboxyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.74 PFLU_RS07555 LamB/YcsF family protein 0.59 PFLU_RS07565 biotin-dependent carboxyltransferase 0.45 2
Pseudomonas sp. DMC3 0.74 GFF2327 5-oxoprolinase subunit A 3 0.59 GFF2329 5-oxoprolinase subunit C low > 89
Pseudomonas simiae WCS417 0.73 PS417_07470 hypothetical protein 0.59 PS417_07480 allophanate hydrolase — —
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_2708 Lactam utilization protein LamB 0.57 Pf6N2E2_2706 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) 0.71 2
Pseudomonas aeruginosa PA14 0.72 IKLFDK_10305 5-oxoprolinase subunit A 2 0.55 IKLFDK_10295 allophanate hydrolase — —
Pseudomonas sp. BP01 0.72 JOY50_RS01450 5-oxoprolinase subunit PxpA 0.57 JOY50_RS01440 biotin-dependent carboxyltransferase family protein low > 84
Pseudomonas putida KT2440 0.71 PP_4577 UPF0271 protein PP_4577 0.57 PP_4575 Urea amidolyase-related protein 0.42 3
Pseudomonas aeruginosa PUPa3 0.69 DQ20_RS39065 5-oxoprolinase subunit PxpA 0.55 DQ20_RS39055 biotin-dependent carboxyltransferase family protein 0.32 6
Pseudomonas aeruginosa MRSN321 0.69 DY961_RS16780 5-oxoprolinase subunit PxpA 0.55 DY961_RS16770 biotin-dependent carboxyltransferase family protein low > 100
Pseudomonas sp. S08-1 0.57 OH686_08750 Lactam utilization protein LamB 0.27 OH686_08740 Allophanate hydrolase 2 subunit 2 low > 80
Marinobacter adhaerens HP15 0.54 HP15_2685 UPF0271 protein, LamB/YcsF family 0.38 HP15_2687 urea amidolyase related protein 0.86 1
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_18055 hypothetical protein 0.34 CSW01_18065 allophanate hydrolase low > 62
Alteromonas macleodii MIT1002 0.47 MIT1002_02298 LamB/YcsF family protein 0.27 MIT1002_02296 KipI antagonist 0.89 5
Rhodopseudomonas palustris CGA009 0.43 TX73_013895 LamB/YcsF family protein 0.25 TX73_013900 biotin-dependent carboxyltransferase family protein low > 86
Fusobacterium nucleatum SB010 0.42 HUW76_07935 LamB/YcsF family protein 0.29 HUW76_07950 biotin-dependent carboxyltransferase family protein low > 35
Variovorax sp. SCN45 0.39 GFF5546 Lactam utilization protein LamB 0.27 GFF2323 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) — —
Phaeobacter inhibens DSM 17395 0.39 PGA1_c28700 LamB/YcsF family protein 0.16 PGA1_c28710 allophanate hydrolase, subunit 2 low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_08790 LamB/YcsF family protein 0.29 CA264_08795 KipI antagonist low > 74
Ralstonia solanacearum GMI1000 0.38 RS_RS21600 hypothetical protein 0.30 RS_RS10890 allophanate hydrolase low > 80
Azospirillum sp. SherDot2 0.37 MPMX19_04959 5-oxoprolinase subunit A 0.28 MPMX19_04957 5-oxoprolinase subunit C low > 112
Pedobacter sp. GW460-11-11-14-LB5 0.37 CA265_RS10100 lactam utilization protein LamB 0.22 CA265_RS10105 urea amidolyase low > 88
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS20540 LamB/YcsF family protein 0.27 HSERO_RS08785 hypothetical protein — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS02850 hypothetical protein 0.30 RPSI07_RS13785 allophanate hydrolase low > 81
Mucilaginibacter yixingensis YX-36 DSM 26809 0.35 ABZR88_RS12605 5-oxoprolinase subunit PxpA 0.22 ABZR88_RS12610 biotin-dependent carboxyltransferase family protein low > 71
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS00650 hypothetical protein 0.27 RR42_RS00645 allophanate hydrolase 0.31 30
Rahnella sp. WP5 0.34 EX31_RS15535 LamB/YcsF family protein 0.28 EX31_RS23390 biotin-dependent carboxyltransferase family protein low > 89
Bosea sp. OAE506 0.34 ABIE41_RS24170 5-oxoprolinase subunit PxpA 0.25 ABIE41_RS24180 biotin-dependent carboxyltransferase family protein low > 77
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS28660 5-oxoprolinase subunit PxpA 0.25 QEN71_RS28655 biotin-dependent carboxyltransferase family protein low > 153
Enterobacter sp. TBS_079 0.33 MPMX20_01347 5-oxoprolinase subunit A 0.27 MPMX20_01346 5-oxoprolinase subunit C 0.29 8
Rhodospirillum rubrum S1H 0.33 Rru_A1504 LamB/YcsF (NCBI) 0.23 Rru_A1505 Allophanate hydrolase subunit 2 (NCBI) low > 58
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS15325 5-oxoprolinase subunit PxpA 0.30 ABZR87_RS15330 biotin-dependent carboxyltransferase family protein 0.93 2
Ralstonia solanacearum UW163 0.33 UW163_RS10245 LamB/YcsF family protein 0.30 UW163_RS10240 allophanate hydrolase — —
Dickeya dadantii 3937 0.33 DDA3937_RS06425 5-oxoprolinase subunit PxpA 0.31 DDA3937_RS06420 biotin-dependent carboxyltransferase family protein low > 74
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS03425 LamB/YcsF family protein 0.30 RALBFv3_RS03430 allophanate hydrolase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.32 GFF4618 Lactam utilization protein LamB 0.26 GFF4617 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) low > 78
Dickeya dianthicola 67-19 0.32 HGI48_RS06470 5-oxoprolinase subunit PxpA 0.30 HGI48_RS06465 biotin-dependent carboxyltransferase family protein low > 71
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_03004 hypothetical protein 0.25 OHPLBJKB_03005 putative protein YbgK low > 74
Escherichia coli ECRC62 0.32 BNILDI_21375 pxpA 5-oxoprolinase subunit PxpA 0.25 BNILDI_21380 pxpC 5-oxoprolinase subunit PxpC low > 75
Escherichia coli BL21 0.32 ECD_00673 UPF0271 family protein 0.25 ECD_00672 putative allophanate hydrolase, subunit 2 low > 61
Escherichia coli ECRC98 0.32 JDDGAC_10650 pxpA 5-oxoprolinase subunit PxpA 0.26 JDDGAC_10655 pxpC 5-oxoprolinase subunit PxpC low > 87
Escherichia coli ECRC100 0.32 OKFHMN_06995 pxpA 5-oxoprolinase subunit PxpA 0.26 OKFHMN_07000 pxpC 5-oxoprolinase subunit PxpC low > 79
Escherichia coli ECRC102 0.32 NIAGMN_05050 pxpA 5-oxoprolinase subunit PxpA 0.26 NIAGMN_05055 pxpC 5-oxoprolinase subunit PxpC low > 80
Shewanella loihica PV-4 0.32 Shew_0006 LamB/YcsF family protein (RefSeq) 0.25 Shew_0007 urea amidolyase related protein (RefSeq) low > 60
Escherichia coli ECOR27 0.32 NOLOHH_23380 pxpA 5-oxoprolinase subunit PxpA 0.25 NOLOHH_23385 pxpC 5-oxoprolinase subunit PxpC low > 76
Escherichia coli ECRC99 0.32 KEDOAH_20970 pxpA 5-oxoprolinase subunit PxpA 0.26 KEDOAH_20965 pxpC 5-oxoprolinase subunit PxpC — —
Escherichia coli ECRC101 0.32 MCAODC_26215 pxpA 5-oxoprolinase subunit PxpA 0.26 MCAODC_26220 pxpC 5-oxoprolinase subunit PxpC low > 87
Escherichia coli BW25113 0.32 b0713 ybgL hypothetical protein (NCBI) 0.25 b0712 ybgK predicted enzyme subunit (NCBI) low > 76
Dickeya dianthicola ME23 0.31 DZA65_RS06815 5-oxoprolinase subunit PxpA 0.30 DZA65_RS06810 biotin-dependent carboxyltransferase family protein low > 75
Enterobacter asburiae PDN3 0.31 EX28DRAFT_2274 Uncharacterized proteins, homologs of lactam utilization protein B 0.28 EX28DRAFT_2275 biotin-dependent carboxylase uncharacterized domain low > 76
Serratia liquefaciens MT49 0.31 IAI46_06225 5-oxoprolinase subunit PxpA 0.29 IAI46_06220 biotin-dependent carboxyltransferase family protein low > 87
Pantoea sp. MT58 0.31 IAI47_13795 5-oxoprolinase subunit PxpA 0.27 IAI47_13800 biotin-dependent carboxyltransferase family protein low > 76
Escherichia fergusonii Becca 0.31 EFB2_03390 5-oxoprolinase subunit A 0.26 EFB2_03391 5-oxoprolinase subunit C low > 86
Escherichia coli Nissle 1917 0.31 ECOLIN_RS03815 5-oxoprolinase subunit PxpA 0.26 ECOLIN_RS03810 5-oxoprolinase subunit PxpC — —
Lysobacter sp. OAE881 0.31 ABIE51_RS08130 5-oxoprolinase subunit PxpA 0.23 ABIE51_RS08140 biotin-dependent carboxyltransferase family protein low > 62
Escherichia coli ECOR38 0.30 HEPCGN_01215 pxpA 5-oxoprolinase subunit PxpA 0.25 HEPCGN_01210 pxpC 5-oxoprolinase subunit PxpC low > 88
Pantoea agglomerans CFBP13505 P0401 0.30 PagCFBP13505_RS03510 5-oxoprolinase subunit PxpA 0.26 PagCFBP13505_RS03505 biotin-dependent carboxyltransferase family protein low > 74
Klebsiella pneumoniae MKP103 0.30 KDGMDA_16680 5-oxoprolinase subunit PxpA 0.29 KDGMDA_16675 Carboxyltransferase domain subdomain A and B low > 95
Pectobacterium carotovorum WPP14 0.30 HER17_RS14975 5-oxoprolinase subunit PxpA 0.27 HER17_RS14980 biotin-dependent carboxyltransferase family protein low > 75
Erwinia amylovora T8 0.29 OLJFJH_16995 5-oxoprolinase subunit PxpA 0.25 OLJFJH_17000 Carboxyltransferase domain subdomain A and B low > 58
Klebsiella michiganensis M5al 0.29 BWI76_RS08360 LamB/YcsF family protein 0.29 BWI76_RS08355 hypothetical protein low > 92
Cellulophaga baltica 18 0.28 M666_RS14890 5-oxoprolinase subunit PxpA 0.20 M666_RS14900 biotin-dependent carboxyltransferase family protein low > 67

Not shown: 16 genomes with orthologs for Psest_1542 only; 3 genomes with orthologs for Psest_1540 only