Conservation of cofitness between GFF3668 and GFF1434 in Sphingobium sp. HT1-2

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF3668 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) 1.0 GFF1434 Formyltetrahydrofolate deformylase (EC 3.5.1.10) 0.58 80
Marinobacter adhaerens HP15 0.59 HP15_2023 UDP-glucuronic acid epimerase 0.41 HP15_1358 formyltetrahydrofolate deformylase — —
Magnetospirillum magneticum AMB-1 0.59 AMB_RS10910 nucleoside-diphosphate sugar epimerase 0.55 AMB_RS18080 formyltetrahydrofolate deformylase — —
Dechlorosoma suillum PS 0.58 Dsui_0401 nucleoside-diphosphate-sugar epimerase 0.48 Dsui_0762 formyltetrahydrofolate deformylase — —
Desulfovibrio vulgaris Hildenborough JW710 0.57 DVU3356 NAD-dependent epimerase/dehydratase family protein (TIGR) 0.50 DVU1540 purU formyltetrahydrofolate deformylase (TIGR) — —
Pantoea agglomerans CFBP13505 P0401 0.57 PagCFBP13505_RS02880 NAD-dependent epimerase 0.35 PagCFBP13505_RS02850 formyltetrahydrofolate deformylase low > 74
Pantoea sp. MT58 0.56 IAI47_09040 NAD-dependent epimerase 0.35 IAI47_09010 formyltetrahydrofolate deformylase low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF124 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) 0.49 GFF2737 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 90
Xanthobacter sp. DMC5 0.56 GFF1127 UDP-N-acetylglucosamine 4-epimerase 0.50 GFF281 Formyltetrahydrofolate deformylase — —
Azospirillum sp. SherDot2 0.56 MPMX19_01802 UDP-N-acetylglucosamine 4-epimerase 0.56 MPMX19_04425 Formyltetrahydrofolate deformylase — —
Lysobacter sp. OAE881 0.55 ABIE51_RS07830 NAD-dependent epimerase 0.50 ABIE51_RS07700 formyltetrahydrofolate deformylase low > 62
Azospirillum brasilense Sp245 0.55 AZOBR_RS09110 UDP-glucose/glucuronate epimerase 0.55 AZOBR_RS21685 formyltetrahydrofolate deformylase — —
Enterobacter asburiae PDN3 0.55 EX28DRAFT_0531 Nucleoside-diphosphate-sugar epimerases 0.35 EX28DRAFT_0858 formyltetrahydrofolate deformylase low > 76
Klebsiella pneumoniae MKP103 0.55 KDGMDA_26135 protein CapI 0.35 KDGMDA_24520 formyltetrahydrofolate deformylase low > 95
Shewanella oneidensis MR-1 0.55 SO4686 NAD dependent epimerase/dehydratase family protein (NCBI ptt file) 0.33 SO1624 purU formyltetrahydrofolate deformylase (NCBI ptt file) low > 76
Desulfovibrio vulgaris Miyazaki F 0.55 DvMF_2048 NAD-dependent epimerase/dehydratase (RefSeq) 0.48 DvMF_0189 purU formyltetrahydrofolate deformylase (RefSeq) — —
Alteromonas macleodii MIT1002 0.55 MIT1002_02835 dTDP-glucose 4,6-dehydratase 2 0.44 MIT1002_00404 Formyltetrahydrofolate deformylase — —
Serratia liquefaciens MT49 0.54 IAI46_14235 NAD-dependent epimerase 0.34 IAI46_14265 formyltetrahydrofolate deformylase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.54 Echvi_2328 Nucleoside-diphosphate-sugar epimerases 0.42 Echvi_1543 formyltetrahydrofolate deformylase low > 79
Shewanella sp. ANA-3 0.54 Shewana3_4089 NAD-dependent epimerase/dehydratase (RefSeq) 0.34 Shewana3_2821 purU formyltetrahydrofolate deformylase (RefSeq) 0.52 59
Rhodopseudomonas palustris CGA009 0.54 TX73_020625 NAD-dependent epimerase 0.49 TX73_020890 formyltetrahydrofolate deformylase low > 86
Enterobacter sp. TBS_079 0.54 MPMX20_03010 UDP-glucose 4-epimerase 0.35 MPMX20_02596 Formyltetrahydrofolate deformylase low > 85
Dickeya dianthicola ME23 0.54 DZA65_RS07160 NAD-dependent epimerase 0.37 DZA65_RS10810 formyltetrahydrofolate deformylase — —
Erwinia amylovora T8 0.54 OLJFJH_13300 protein CapI 0.34 OLJFJH_13275 formyltetrahydrofolate deformylase — —
Dickeya dadantii 3937 0.54 DDA3937_RS06785 NAD-dependent epimerase 0.36 DDA3937_RS10325 formyltetrahydrofolate deformylase — —
Rahnella sp. WP5 0.54 EX31_RS10090 NAD-dependent epimerase 0.36 EX31_RS10115 formyltetrahydrofolate deformylase low > 89
Dickeya dianthicola 67-19 0.53 HGI48_RS06820 NAD-dependent epimerase 0.36 HGI48_RS10335 formyltetrahydrofolate deformylase — —
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_5106 NAD-dependent epimerase/dehydratase 0.48 Psyr_4717 formyltetrahydrofolate deformylase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_5106 NAD-dependent epimerase/dehydratase 0.48 Psyr_4717 formyltetrahydrofolate deformylase low > 86
Klebsiella michiganensis M5al 0.53 BWI76_RS18995 NAD-dependent epimerase 0.34 BWI76_RS17290 formyltetrahydrofolate deformylase — —
Erwinia tracheiphila HP pepo 2.2 0.52 IJEDHG_22705 protein CapI 0.34 IJEDHG_22670 purU formyltetrahydrofolate deformylase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.52 ABZR88_RS17530 NAD-dependent epimerase 0.34 ABZR88_RS14140 formyltetrahydrofolate deformylase low > 71
Erwinia tracheiphila SCR3 0.52 LU632_RS12910 NAD-dependent epimerase 0.34 LU632_RS12940 purU formyltetrahydrofolate deformylase low > 74
Shewanella amazonensis SB2B 0.51 Sama_2235 NAD dependent epimerase/dehydratase family protein (RefSeq) 0.36 Sama_1134 purU formyltetrahydrofolate deformylase (RefSeq) low > 62
Bacteroides thetaiotaomicron VPI-5482 0.51 BT1342 putative UDP-glucuronic acid epimerase (NCBI ptt file) 0.41 BT1381 formyltetrahydrofolate deformylase (NCBI ptt file) low > 81
Rhodospirillum rubrum S1H 0.50 Rru_A3576 UDP-glucuronate 5'-epimerase (NCBI) 0.55 Rru_A0556 Formyltetrahydrofolate deformylase (NCBI) — —
Pseudomonas sp. BP01 0.50 JOY50_RS24550 NAD-dependent epimerase/dehydratase family protein 0.48 JOY50_RS04775 purU formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_5885 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) 0.48 Pf1N1B4_2460 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 87
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.4890.1 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) 0.48 Xcc-8004.395.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 74
Pseudomonas sp. SVBP6 0.50 COO64_RS21120 NAD-dependent epimerase 0.47 COO64_RS00020 purU formyltetrahydrofolate deformylase low > 93
Cellulophaga baltica 18 0.50 M666_RS12330 NAD-dependent epimerase 0.39 M666_RS19335 formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_26320 protein CapI 0.48 AO356_17895 formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens FW300-N2E2 0.50 Pf6N2E2_1139 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) 0.48 Pf6N2E2_5508 Formyltetrahydrofolate deformylase (EC 3.5.1.10) low > 103
Pedobacter sp. GW460-11-11-14-LB5 0.50 CA265_RS07970 NAD-dependent epimerase 0.35 CA265_RS21155 formyltetrahydrofolate deformylase low > 88
Pseudomonas sp. DMC3 0.49 GFF3565 UDP-N-acetylglucosamine 4-epimerase 0.48 GFF102 Formyltetrahydrofolate deformylase low > 89
Bosea sp. OAE506 0.49 ABIE41_RS10525 NAD-dependent epimerase 0.48 ABIE41_RS02615 formyltetrahydrofolate deformylase low > 77
Pseudomonas sp. RS175 0.48 PFR28_02769 UDP-N-acetylglucosamine 4-epimerase 0.49 PFR28_03439 Formyltetrahydrofolate deformylase — —
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_02463 UDP-N-acetylglucosamine 4-epimerase 0.51 CCNA_03745 formyltetrahydrofolate deformylase — —
Caulobacter crescentus NA1000 0.48 CCNA_02463 UDP-N-acetylglucosamine 4-epimerase 0.51 CCNA_03745 formyltetrahydrofolate deformylase — —
Sphingomonas koreensis DSMZ 15582 0.46 Ga0059261_3131 Nucleoside-diphosphate-sugar epimerases 0.64 Ga0059261_1821 formyltetrahydrofolate deformylase (EC 3.5.1.10) — —
Sinorhizobium meliloti 1021 0.45 SMc02640 UDP-glucuronic acid epimerase 0.49 SMc03205 formyltetrahydrofolate deformylase — —
Agrobacterium fabrum C58 0.45 Atu4148 UDP-glucuronic acid epimerase 0.48 Atu4231 formyltetrahydrofolate deformylase low > 89
Phocaeicola dorei CL03T12C01 0.45 ABI39_RS14815 NAD-dependent epimerase 0.42 ABI39_RS19915 formyltetrahydrofolate deformylase low > 72
Phocaeicola vulgatus CL09T03C04 0.45 HMPREF1058_RS18480 NAD-dependent epimerase 0.42 HMPREF1058_RS06160 formyltetrahydrofolate deformylase low > 67
Rhizobium sp. OAE497 0.44 ABIE40_RS14855 NAD-dependent epimerase 0.48 ABIE40_RS00960 formyltetrahydrofolate deformylase low > 107
Herbaspirillum seropedicae SmR1 0.22 HSERO_RS20975 UDP-galactose-4-epimerase 0.51 HSERO_RS07970 formyltetrahydrofolate deformylase low > 78
Castellaniella sp019104865 MT123 0.21 ABCV34_RS09365 SDR family oxidoreductase 0.49 ABCV34_RS00645 formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens SBW25 0.21 PFLU_RS02390 NAD-dependent epimerase/dehydratase family protein 0.49 PFLU_RS27800 formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS02390 NAD-dependent epimerase/dehydratase family protein 0.49 PFLU_RS27800 formyltetrahydrofolate deformylase — —
Pseudomonas simiae WCS417 0.20 PS417_02315 NAD-dependent dehydratase 0.48 PS417_26170 formyltetrahydrofolate deformylase — —
Burkholderia phytofirmans PsJN 0.20 BPHYT_RS23350 NAD-dependent epimerase/dehydratase 0.51 BPHYT_RS02955 formyltetrahydrofolate deformylase low > 109
Acinetobacter radioresistens SK82 0.20 MPMX26_00051 UDP-N-acetylglucosamine 4-epimerase 0.40 MPMX26_00378 Formyltetrahydrofolate deformylase low > 36
Pseudomonas lactucae CFBP13502 0.19 GEMAOFIL_00700 UDP-glucose 4-epimerase 0.48 GEMAOFIL_05347 Formyltetrahydrofolate deformylase — —
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_06770 NAD-dependent dehydratase 0.48 AO353_07640 formyltetrahydrofolate deformylase — —
Mycobacterium tuberculosis H37Rv 0.19 Rv3634c UDP-glucose 4-epimerase GalE1 (galactowaldenase) (UDP-galactose 4-epimerase) (uridine diphosphate galactose 4-epimerase) (uridine diphospho-galactose 4-epimerase) 0.37 Rv2964 Probable formyltetrahydrofolate deformylase PurU (formyl-FH(4) hydrolase) — —

Not shown: 8 genomes with orthologs for GFF3668 only; 42 genomes with orthologs for GFF1434 only