Conservation of cofitness between CSW01_16930 and CSW01_16895 in Vibrio cholerae E7946 ATCC 55056

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_16930 YceI family protein 1.0 CSW01_16895 DNA-binding response regulator 0.43 14
Shewanella sp. ANA-3 0.58 Shewana3_1179 hypothetical protein (RefSeq) 0.35 Shewana3_0059 two component transcriptional regulator (RefSeq) — —
Alteromonas macleodii MIT1002 0.57 MIT1002_03884 hypothetical protein 0.32 MIT1002_01389 KDP operon transcriptional regulatory protein KdpE low > 70
Shewanella oneidensis MR-1 0.55 SO3370 conserved hypothetical protein (NCBI ptt file) 0.34 SO0059 kdpE transcriptional regulatory protein KdpE (NCBI ptt file) low > 76
Pseudomonas segetis P6 0.52 ACVTMO_RS03190 YceI family protein 0.47 ACVTMO_RS05025 response regulator low > 75
Escherichia coli ECRC99 0.51 KEDOAH_23995 yceI YceI family protein 0.46 KEDOAH_20890 kdpE two-component system response regulator KdpE — —
Escherichia coli ECRC101 0.51 MCAODC_23120 yceI YceI family protein 0.46 MCAODC_26295 kdpE two-component system response regulator KdpE low > 87
Escherichia coli ECRC62 0.51 BNILDI_19450 yceI YceI family protein 0.47 BNILDI_21465 kdpE two-component system response regulator KdpE low > 75
Escherichia coli ECOR27 0.51 NOLOHH_21290 yceI YceI family protein 0.47 NOLOHH_23460 kdpE two-component system response regulator KdpE low > 76
Escherichia coli ECRC98 0.51 JDDGAC_07420 yceI YceI family protein 0.46 JDDGAC_10730 kdpE two-component system response regulator KdpE low > 87
Escherichia coli BL21 0.51 ECD_01052 periplasmic high pH-inducible lipid-binding protein 0.46 ECD_00651 response regulator in two-component regulatory system with KdpD — —
Escherichia coli ECRC100 0.51 OKFHMN_03760 yceI YceI family protein 0.46 OKFHMN_07080 kdpE two-component system response regulator KdpE — —
Escherichia coli ECRC102 0.51 NIAGMN_24070 yceI YceI family protein 0.46 NIAGMN_05135 kdpE two-component system response regulator KdpE — —
Escherichia coli BW25113 0.51 b1056 yceI hypothetical protein (NCBI) 0.47 b0694 kdpE DNA-binding response regulator in two-component regulatory system with KdpD (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_02609 Protein YceI 0.47 OHPLBJKB_03023 KDP operon transcriptional regulatory protein KdpE low > 74
Escherichia coli ECOR38 0.50 HEPCGN_23730 yceI YceI family protein 0.47 HEPCGN_01155 kdpE two-component system response regulator KdpE low > 88
Escherichia fergusonii Becca 0.50 EFB2_02918 Protein YceI 0.47 EFB2_03402 KDP operon transcriptional regulatory protein KdpE low > 86
Escherichia coli Nissle 1917 0.50 ECOLIN_RS06130 YceI family protein 0.47 ECOLIN_RS03750 two-component system response regulator KdpE — —
Pseudomonas sp. S08-1 0.50 OH686_10840 Protein yceI precursor 0.47 OH686_01885 DNA-binding response regulator KdpE low > 80
Enterobacter sp. TBS_079 0.50 MPMX20_01736 Protein YceI 0.49 MPMX20_01337 KDP operon transcriptional regulatory protein KdpE low > 85
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_08035 hypothetical protein 0.48 AO353_18935 transcriptional regulator low > 101
Pseudomonas orientalis W4I3 0.49 QF045_RS00925 YceI family protein 0.47 QF045_RS11020 response regulator low > 93
Pseudomonas lactucae CFBP13502 0.49 GEMAOFIL_05437 Protein YceI 0.47 GEMAOFIL_01790 KDP operon transcriptional regulatory protein KdpE low > 96
Pantoea sp. MT58 0.49 IAI47_12245 YceI family protein 0.46 IAI47_13830 two-component system response regulator KdpE low > 76
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_0457 YceI 0.46 Psyr_2051 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas aeruginosa MRSN321 0.49 DY961_RS22100 YceI family protein 0.47 DY961_RS19835 response regulator low > 100
Pseudomonas aeruginosa PA14 0.49 IKLFDK_23305 YceI family protein 0.48 IKLFDK_07850 DNA-binding response regulator low > 98
Enterobacter asburiae PDN3 0.49 EX28DRAFT_1875 Uncharacterized conserved protein 0.49 EX28DRAFT_2284 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 76
Pseudomonas aeruginosa PUPa3 0.49 DQ20_RS37205 YceI family protein 0.48 DQ20_RS53940 response regulator low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_0457 YceI 0.46 Psyr_2051 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pantoea agglomerans CFBP13505 P0401 0.49 PagCFBP13505_RS05085 YceI family protein 0.46 PagCFBP13505_RS03475 two-component system response regulator KdpE low > 74
Pseudomonas putida KT2440 0.48 PP_4981 polyisoprene-binding protein, acidic stress response factor 0.46 PP_4157 two-component system DNA-binding response activator KdpE low > 96
Pseudomonas simiae WCS417 0.48 PS417_26530 hypothetical protein 0.47 PS417_08305 transcriptional regulator low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF3335 Protein yceI precursor 0.45 GFF4606 sensor histidine kinase — —
Pseudomonas fluorescens SBW25 0.48 PFLU_RS28185 YceI family protein 0.47 PFLU_RS08245 response regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.48 PFLU_RS28185 YceI family protein 0.47 PFLU_RS08245 response regulator low > 109
Pseudomonas sp. BP01 0.48 JOY50_RS09790 YceI family protein 0.47 JOY50_RS07160 response regulator low > 84
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_13585 hypothetical protein 0.47 AO356_03295 transcriptional regulator low > 104
Pseudomonas sp. DMC3 0.47 GFF175 Protein YceI 0.47 GFF4642 Transcriptional regulatory protein KdpE low > 89
Pseudomonas sp. SVBP6 0.47 COO64_RS17465 YceI family protein 0.47 COO64_RS09705 response regulator low > 93
Dickeya dianthicola ME23 0.47 DZA65_RS13730 YceI family protein 0.45 DZA65_RS06755 two-component system response regulator KdpE low > 75
Dickeya dadantii 3937 0.47 DDA3937_RS13190 YceI family protein 0.46 DDA3937_RS06365 two-component system response regulator KdpE low > 74
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_4634 Protein yceI precursor 0.47 Pf6N2E2_2490 sensor histidine kinase low > 103
Dickeya dianthicola 67-19 0.47 HGI48_RS13255 YceI family protein 0.45 HGI48_RS06410 two-component system response regulator KdpE low > 71
Erwinia amylovora T8 0.46 OLJFJH_15695 YceI family protein 0.49 OLJFJH_17030 two-component system response regulator KdpE low > 58
Erwinia tracheiphila SCR3 0.46 LU632_RS10305 YceI family protein 0.48 LU632_RS16165 kdpE two-component system response regulator KdpE low > 73
Pseudomonas sp. RS175 0.45 PFR28_04205 Protein YceI 0.47 PFR28_00943 KDP operon transcriptional regulatory protein KdpE low > 88
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_2381 Protein yceI precursor 0.48 Pf1N1B4_311 sensor histidine kinase low > 87
Pectobacterium carotovorum WPP14 0.44 HER17_RS08575 YceI family protein 0.46 HER17_RS15050 two-component system response regulator KdpE low > 75
Serratia liquefaciens MT49 0.43 IAI46_09690 YceI family protein 0.45 IAI46_06160 two-component system response regulator KdpE low > 87
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_1047 Protein yceI precursor 0.46 PfGW456L13_2205 sensor histidine kinase low > 87
Rahnella sp. WP5 0.43 EX31_RS24340 YceI family protein 0.45 EX31_RS23330 two-component system response regulator KdpE low > 89
Rhodospirillum rubrum S1H 0.30 Rru_A3681 YceI (NCBI) 0.47 Rru_A1159 Two component Transcriptional regulator, Winged helix family (NCBI) low > 58
Azospirillum sp. SherDot2 0.30 MPMX19_03035 Protein YceI 0.44 MPMX19_03749 KDP operon transcriptional regulatory protein KdpE low > 112
Azospirillum brasilense Sp245 0.30 AZOBR_RS24000 polyprenyl-pyrophosphate binding protein 0.43 AZOBR_RS23980 Fis family transcriptional regulator low > 97
Methylophilus sp. DMC18 0.29 GFF936 Protein YceI 0.47 GFF2684 KDP operon transcriptional regulatory protein KdpE low > 43
Brevundimonas sp. GW460-12-10-14-LB2 0.26 A4249_RS15520 YceI family protein 0.45 A4249_RS15625 response regulator low > 48
Lysobacter sp. OAE881 0.26 ABIE51_RS17655 YceI family protein 0.44 ABIE51_RS10000 response regulator transcription factor low > 62
Dyella japonica UNC79MFTsu3.2 0.25 ABZR86_RS17165 YceI family protein 0.47 ABZR86_RS13215 response regulator low > 74
Ralstonia solanacearum PSI07 0.25 RPSI07_RS05700 polyisoprenoid-binding protein 0.45 RPSI07_RS09645 two-component system response regulator KdpE low > 81
Acinetobacter radioresistens SK82 0.25 MPMX26_01773 Protein YceI 0.43 MPMX26_02240 Transcriptional regulatory protein KdpE — —
Ralstonia solanacearum GMI1000 0.24 RS_RS23115 polyisoprenoid-binding protein 0.45 RS_RS15505 two-component system response regulator KdpE low > 80
Paraburkholderia sabiae LMG 24235 0.24 QEN71_RS16655 YceI family protein 0.50 QEN71_RS24340 two-component system response regulator KdpE low > 153
Acinetobacter baumannii LAC-4 0.23 RR41_RS11880 YceI family protein 0.42 RR41_RS06945 response regulator transcription factor low > 55
Paraburkholderia graminis OAS925 0.23 ABIE53_004674 polyisoprenoid-binding protein YceI 0.49 ABIE53_001557 two-component system KDP operon response regulator KdpE low > 113
Paraburkholderia bryophila 376MFSha3.1 0.22 H281DRAFT_04665 Polyisoprenoid-binding protein YceI 0.49 H281DRAFT_04533 two-component system, OmpR family, KDP operon response regulator KdpE low > 103
Burkholderia phytofirmans PsJN 0.22 BPHYT_RS03435 polyisoprenoid-binding protein 0.50 BPHYT_RS06465 transcriptional regulator low > 109
Herbaspirillum seropedicae SmR1 0.20 HSERO_RS03410 polyisoprenoid-binding protein 0.43 HSERO_RS18850 transcriptional regulator — —
Ralstonia sp. UNC404CL21Col 0.20 ABZR87_RS01300 YceI family protein 0.44 ABZR87_RS03270 two-component system response regulator KdpE low > 80
Klebsiella pneumoniae MKP103 0.20 KDGMDA_24430 polyisoprenoid-binding protein 0.46 KDGMDA_16625 two-component system response regulator KdpE low > 95
Ralstonia solanacearum IBSBF1503 0.19 RALBFv3_RS05705 polyisoprenoid-binding protein 0.45 RALBFv3_RS07605 two-component system response regulator KdpE low > 76
Ralstonia solanacearum UW163 0.19 UW163_RS07920 polyisoprenoid-binding protein 0.45 UW163_RS06015 two-component system response regulator KdpE — —
Variovorax sp. SCN45 0.18 GFF6285 Probable signal peptide protein 0.46 GFF3521 DNA-binding response regulator KdpE low > 127
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_4033 Uncharacterized conserved protein 0.40 Ga0059261_3886 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 68
Variovorax sp. OAS795 0.17 ABID97_RS04790 YceI family protein 0.46 ABID97_RS01005 two-component system response regulator KdpE low > 91

Not shown: 10 genomes with orthologs for CSW01_16930 only; 20 genomes with orthologs for CSW01_16895 only