| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_13640 | | DNA-binding response regulator | 1.0 | CSW01_16010 | | N-acetyltransferase | 0.45 | 16 |
| Shewanella amazonensis SB2B | 0.54 | Sama_2076 | | response regulator receiver protein (RefSeq) | 0.27 | Sama_1342 | | phosphinothricin N-acetyltransferase, putative (RefSeq) | low | > 62 |
| Pseudomonas stutzeri RCH2 | 0.53 | Psest_2864 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | 0.22 | Psest_0559 | | Sortase and related acyltransferases | low | > 67 |
| Acinetobacter baumannii LAC-4 | 0.52 | RR41_RS00990 | | response regulator transcription factor | 0.24 | RR41_RS11825 | | GNAT family N-acetyltransferase | low | > 55 |
| Pseudomonas putida KT2440 | 0.52 | PP_1635 | | DNA-binding response regulator | 0.28 | PP_4846 | | L-amino acid N-acyltransferase | low | > 96 |
| Pseudomonas sp. S08-1 | 0.52 | OH686_18240 | | Two-component transcriptional response regulator, LuxR family | 0.23 | OH686_07720 | | L-amino acid N-acyltransferase MnaT | low | > 80 |
| Pseudomonas sp. BP01 | 0.51 | JOY50_RS23810 | erdR | response regulator transcription factor ErdR | 0.29 | JOY50_RS17490 | | GNAT family N-acetyltransferase | low | > 84 |
| Pseudomonas sp. SVBP6 | 0.51 | COO64_RS19960 | erdR | response regulator transcription factor ErdR | 0.25 | COO64_RS18150 | | GNAT family N-acetyltransferase | low | > 93 |
| Pseudomonas lactucae CFBP13502 | 0.51 | GEMAOFIL_01339 | | Transcriptional regulatory protein LnrK | 0.27 | GEMAOFIL_00794 | | L-methionine sulfoximine/L-methionine sulfone acetyltransferase | low | > 96 |
| Pseudomonas simiae WCS417 | 0.51 | PS417_05840 | | LuxR family transcriptional regulator | 0.28 | PS417_02800 | | acetyltransferase | low | > 88 |
| Pseudomonas segetis P6 | 0.51 | ACVTMO_RS16470 | erdR | response regulator transcription factor ErdR | 0.25 | ACVTMO_RS04020 | | arsinothricin resistance N-acetyltransferase ArsN1 family B | low | > 75 |
| Pseudomonas orientalis W4I3 | 0.50 | QF045_RS08755 | | response regulator transcription factor ErdR | 0.27 | QF045_RS05845 | | N-acetyltransferase family protein | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.50 | AO353_16835 | | LuxR family transcriptional regulator | 0.24 | AO353_13510 | | acetyltransferase | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.50 | PFLU_RS05910 | | response regulator transcription factor | 0.27 | PFLU_RS02870 | | N-acetyltransferase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.50 | PFLU_RS05910 | | response regulator transcription factor | 0.27 | PFLU_RS02870 | | N-acetyltransferase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.50 | Pf1N1B4_3150 | | Transcriptional regulator, LuxR family | 0.24 | Pf1N1B4_1350 | | GCN5-related N-acetyltransferase | — | — |
| Pseudomonas aeruginosa MRSN321 | 0.50 | DY961_RS14960 | erdR;inference=COORDINATES | response regulator transcription factor ErdR | 0.27 | DY961_RS10110 | | L-methionine sulfoximine N-acetyltransferase | low | > 100 |
| Pseudomonas fluorescens FW300-N2E2 | 0.50 | Pf6N2E2_2986 | | Transcriptional regulator, LuxR family | 0.24 | Pf6N2E2_3554 | | GCN5-related N-acetyltransferase | low | > 103 |
| Pseudomonas aeruginosa PUPa3 | 0.50 | DQ20_RS42170 | erdR;inference=COORDINATES | response regulator transcription factor ErdR | 0.27 | DQ20_RS51945 | | L-methionine sulfoximine N-acetyltransferase | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.50 | IKLFDK_18400 | | DNA-binding response regulator | 0.27 | IKLFDK_29230 | | L-methionine sulfoximine N-acetyltransferase | low | > 98 |
| Pseudomonas fluorescens GW456-L13 | 0.50 | PfGW456L13_4662 | | Transcriptional regulator, LuxR family | 0.25 | PfGW456L13_88 | | GCN5-related N-acetyltransferase | low | > 87 |
| Pseudomonas sp. DMC3 | 0.50 | GFF2117 | | Transcriptional regulatory protein DegU | 0.25 | GFF3280 | | L-methionine sulfoximine/L-methionine sulfone acetyltransferase | — | — |
| Pseudomonas sp. RS175 | 0.50 | PFR28_00478 | | Transcriptional regulatory protein DegU | 0.24 | PFR28_05180 | | L-methionine sulfoximine/L-methionine sulfone acetyltransferase | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.50 | Psyr_1384 | | regulatory protein, LuxR:Response regulator receiver | 0.27 | Psyr_4433 | | GCN5-related N-acetyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.50 | Psyr_1384 | | regulatory protein, LuxR:Response regulator receiver | 0.27 | Psyr_4433 | | GCN5-related N-acetyltransferase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.49 | AO356_05640 | | LuxR family transcriptional regulator | 0.24 | AO356_08375 | | acetyltransferase | low | > 104 |
| Lysobacter sp. OAE881 | 0.47 | ABIE51_RS01665 | | response regulator transcription factor | 0.21 | ABIE51_RS09315 | | GNAT family N-acetyltransferase | — | — |
| Bosea sp. OAE506 | 0.47 | ABIE41_RS24085 | | response regulator transcription factor | 0.37 | ABIE41_RS20445 | | GNAT family N-acetyltransferase | — | — |
| Rhodanobacter sp000427505 FW510-R12 | 0.47 | LRK53_RS00075 | | response regulator transcription factor | 0.21 | LRK53_RS07655 | | GNAT family N-acetyltransferase | low | > 59 |
| Xanthobacter sp. DMC5 | 0.46 | GFF134 | | Transcriptional regulatory protein DegU | 0.15 | GFF3875 | | L-methionine sulfoximine/L-methionine sulfone acetyltransferase | — | — |
| Agrobacterium fabrum C58 | 0.43 | Atu0484 | | two component response regulator | 0.28 | Atu0907 | | Phosphinothricin acetyltransferase | low | > 89 |
| Rhodopseudomonas palustris CGA009 | 0.43 | TX73_004390 | | response regulator transcription factor | 0.21 | TX73_001030 | | GNAT family N-acetyltransferase | low | > 86 |
| Rhizobium sp. OAE497 | 0.43 | ABIE40_RS02405 | | response regulator transcription factor | 0.29 | ABIE40_RS04970 | | GNAT family N-acetyltransferase | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.42 | SMc02248 | | transcriptional regulator | 0.24 | SMc01229 | | acetyltransferase | low | > 103 |
| Azospirillum brasilense Sp245 | 0.41 | AZOBR_RS12735 | | transcriptional regulator | 0.20 | AZOBR_RS27540 | | GCN5 family N-acetyltransferase | low | > 97 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.39 | A4249_RS15200 | | response regulator transcription factor | 0.16 | A4249_RS06120 | | GNAT family N-acetyltransferase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.36 | Dshi_0465 | | two component transcriptional regulator, LuxR family (RefSeq) | 0.20 | Dshi_0736 | | GCN5-related N-acetyltransferase (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.35 | PGA1_c22610 | | putative transcriptional regulator, containing response regulator domain | 0.20 | PGA1_c21490 | | putative N-acetyltransferase | low | > 62 |
| Magnetospirillum magneticum AMB-1 | 0.35 | AMB_RS13915 | | DNA-binding response regulator | 0.18 | AMB_RS11005 | | N-acetyltransferase | — | — |
| Rhodospirillum rubrum S1H | 0.32 | Rru_A3229 | | Two Component Transcriptional Regulator, LuxR family (NCBI) | 0.17 | Rru_A2407 | | GCN5-related N-acetyltransferase (NCBI) | low | > 58 |
| Variovorax sp. OAS795 | 0.29 | ABID97_RS05205 | | response regulator transcription factor | 0.21 | ABID97_RS14335 | | N-acetyltransferase family protein | low | > 91 |
| Herbaspirillum seropedicae SmR1 | 0.27 | HSERO_RS06185 | | response regulator protein | 0.31 | HSERO_RS22795 | | N-acetyltransferase | low | > 78 |
| Variovorax sp. SCN45 | 0.27 | GFF5786 | | Transcriptional regulator, LuxR family | 0.21 | GFF1022 | | Acetyltransferase, GNAT family | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.25 | GFF107 | | Transcriptional regulator, LuxR family | 0.15 | GFF5741 | | Phosphinothricin N-acetyltransferase | low | > 90 |
| Paraburkholderia sabiae LMG 24235 | 0.25 | QEN71_RS07810 | | response regulator transcription factor | 0.25 | QEN71_RS33375 | | GNAT family N-acetyltransferase | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.25 | ABZR87_RS00385 | | response regulator transcription factor | 0.29 | ABZR87_RS03950 | | GNAT family N-acetyltransferase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.24 | RPSI07_RS12620 | | DNA-binding response regulator | 0.22 | RPSI07_RS01570 | | N-acetyltransferase | low | > 81 |
| Serratia liquefaciens MT49 | 0.24 | IAI46_06400 | | response regulator transcription factor | 0.25 | IAI46_16825 | | N-acetyltransferase family protein | low | > 87 |
| Ralstonia solanacearum UW163 | 0.24 | UW163_RS08905 | | DNA-binding response regulator | 0.24 | UW163_RS05785 | | N-acetyltransferase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.24 | RALBFv3_RS04765 | | DNA-binding response regulator | 0.24 | RALBFv3_RS07840 | | N-acetyltransferase | — | — |
| Enterobacter sp. TBS_079 | 0.22 | MPMX20_01186 | | Transcriptional activator protein ExaE | 0.26 | MPMX20_02412 | | L-amino acid N-acyltransferase MnaT | low | > 85 |
Not shown: 17 genomes with orthologs for CSW01_13640 only; 36 genomes with orthologs for CSW01_16010 only