| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | 1.0 | CSW01_13810 | | phosphoenolpyruvate carboxykinase (ATP) | 0.82 | 10 |
| Dickeya dadantii 3937 | 0.62 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | 0.81 | DDA3937_RS19610 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 74 |
| Dickeya dianthicola 67-19 | 0.61 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | 0.81 | HGI48_RS19740 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 71 |
| Dickeya dianthicola ME23 | 0.61 | DZA65_RS18435 | | YggS family pyridoxal phosphate-dependent enzyme | 0.81 | DZA65_RS20830 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.61 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | 0.80 | HER17_RS01710 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 75 |
| Klebsiella michiganensis M5al | 0.60 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | 0.79 | BWI76_RS26155 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 92 |
| Pantoea agglomerans CFBP13505 P0401 | 0.59 | PagCFBP13505_RS16100 | | YggS family pyridoxal phosphate-dependent enzyme | 0.77 | PagCFBP13505_RS18350 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 74 |
| Enterobacter asburiae PDN3 | 0.59 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | 0.79 | EX28DRAFT_4140 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 76 |
| Pantoea sp. MT58 | 0.58 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.77 | IAI47_01830 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.58 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.81 | GFF615 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | low | > 78 |
| Escherichia coli BL21 | 0.58 | ECD_02781 | | UPF0001 family protein, PLP-binding | 0.81 | ECD_03255 | | phosphoenolpyruvate carboxykinase [ATP] | low | > 61 |
| Escherichia coli BW25113 | 0.58 | b2951 | yggS | predicted enzyme (NCBI) | 0.81 | b3403 | pck | phosphoenolpyruvate carboxykinase (NCBI) | low | > 76 |
| Escherichia coli ECRC100 | 0.58 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | OKFHMN_17045 | pckA | phosphoenolpyruvate carboxykinase (ATP) | low | > 79 |
| Escherichia coli ECRC101 | 0.58 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | MCAODC_07575 | pckA | phosphoenolpyruvate carboxykinase (ATP) | low | > 88 |
| Escherichia coli ECOR38 | 0.58 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | HEPCGN_15865 | pckA | phosphoenolpyruvate carboxykinase (ATP) | low | > 88 |
| Escherichia coli Nissle 1917 | 0.58 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | 0.81 | ECOLIN_RS19435 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 55 |
| Escherichia coli ECOR27 | 0.58 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | NOLOHH_08835 | pckA | phosphoenolpyruvate carboxykinase (ATP) | low | > 76 |
| Escherichia fergusonii Becca | 0.58 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | 0.81 | EFB2_00425 | | Phosphoenolpyruvate carboxykinase (ATP) | low | > 86 |
| Escherichia coli ECRC102 | 0.58 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | NIAGMN_14815 | pckA | phosphoenolpyruvate carboxykinase (ATP) | low | > 80 |
| Escherichia coli ECRC62 | 0.58 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | BNILDI_02685 | pckA | phosphoenolpyruvate carboxykinase (ATP) | low | > 75 |
| Escherichia coli ECRC99 | 0.58 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | KEDOAH_11095 | pckA | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Escherichia coli ECRC98 | 0.58 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | 0.81 | JDDGAC_20675 | pckA | phosphoenolpyruvate carboxykinase (ATP) | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.58 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | 0.81 | OHPLBJKB_00300 | | Phosphoenolpyruvate carboxykinase (ATP) | low | > 74 |
| Rahnella sp. WP5 | 0.57 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | 0.79 | EX31_RS04780 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 89 |
| Shewanella oneidensis MR-1 | 0.56 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | 0.36 | SO0162 | pckA | phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.56 | Shewana3_1194 | | hypothetical protein (RefSeq) | 0.36 | Shewana3_0147 | | phosphoenolpyruvate carboxykinase (RefSeq) | low | > 73 |
| Enterobacter sp. TBS_079 | 0.56 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | 0.79 | MPMX20_04290 | | Phosphoenolpyruvate carboxykinase (ATP) | low | > 85 |
| Serratia liquefaciens MT49 | 0.56 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | 0.81 | IAI46_23770 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.55 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | 0.78 | LU632_RS22930 | pckA | phosphoenolpyruvate carboxykinase (ATP) | low | > 74 |
| Shewanella loihica PV-4 | 0.55 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | 0.37 | Shew_3623 | | phosphoenolpyruvate carboxykinase (RefSeq) | low | > 60 |
| Erwinia tracheiphila HP pepo 2.2 | 0.55 | IJEDHG_03450 | | YggS family pyridoxal phosphate enzyme | 0.78 | IJEDHG_11970 | pckA | phosphoenolpyruvate carboxykinase (ATP) | low | > 61 |
| Klebsiella pneumoniae MKP103 | 0.55 | KDGMDA_04615 | | YggS family pyridoxal phosphate enzyme | 0.81 | KDGMDA_06970 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 95 |
| Erwinia amylovora T8 | 0.55 | OLJFJH_08530 | | YggS family pyridoxal phosphate enzyme | 0.78 | OLJFJH_04150 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 58 |
| Pseudomonas sp. DMC3 | 0.52 | GFF209 | | Pyridoxal phosphate homeostasis protein | 0.33 | GFF4175 | | Phosphoenolpyruvate carboxykinase (ATP) | low | > 89 |
| Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.33 | PfGW456L13_420 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.51 | AO356_13425 | | hypothetical protein | 0.32 | AO356_10140 | | phosphoenolpyruvate carboxykinase [ATP] | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.51 | Pf1N1B4_2342 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.34 | Pf1N1B4_1779 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | — | — |
| Pseudomonas simiae WCS417 | 0.50 | PS417_26725 | | hypothetical protein | 0.34 | PS417_01210 | | hypothetical protein | low | > 88 |
| Pseudomonas lactucae CFBP13502 | 0.50 | GEMAOFIL_05482 | | Pyridoxal phosphate homeostasis protein | 0.35 | GEMAOFIL_00469 | | Phosphoenolpyruvate carboxykinase (ATP) | low | > 93 |
| Pseudomonas sp. S08-1 | 0.50 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | 0.32 | OH686_11060 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 80 |
| Pseudomonas segetis P6 | 0.50 | MPMX49_00611 | | Pyridoxal phosphate homeostasis protein | 0.32 | MPMX49_00777 | | Phosphoenolpyruvate carboxykinase (ATP) | low | > 75 |
| Pseudomonas sp. BP01 | 0.50 | JOY50_RS20910 | | YggS family pyridoxal phosphate-dependent enzyme | 0.33 | JOY50_RS18315 | | phosphoenolpyruvate carboxykinase | 0.31 | 74 |
| Pseudomonas fluorescens FW300-N2E2 | 0.49 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.32 | Pf6N2E2_3899 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | 0.26 | 42 |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | 0.36 | MIT1002_03972 | | Phosphoenolpyruvate carboxykinase [ATP] | low | > 70 |
| Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.34 | PFLU_RS01320 | | phosphoenolpyruvate carboxykinase | low | > 109 |
| Pseudomonas stutzeri RCH2 | 0.49 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | 0.33 | Psest_3988 | | phosphoenolpyruvate carboxykinase (ATP) | 0.31 | 57 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.49 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.33 | Psyr_0168 | | Phosphoenolpyruvate carboxykinase (ATP) | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.49 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.33 | Psyr_0168 | | Phosphoenolpyruvate carboxykinase (ATP) | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.34 | PFLU_RS01320 | | phosphoenolpyruvate carboxykinase | low | > 109 |
| Pseudomonas sp. RS175 | 0.49 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | 0.34 | PFR28_04874 | | Phosphoenolpyruvate carboxykinase (ATP) | 0.32 | 13 |
| Shewanella amazonensis SB2B | 0.48 | Sama_2477 | | hypothetical protein (RefSeq) | 0.38 | Sama_0165 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) | low | > 62 |
| Pseudomonas aeruginosa PA14 | 0.47 | IKLFDK_23450 | | Pyridoxal phosphate homeostasis protein | 0.34 | IKLFDK_27515 | | phosphoenolpyruvate carboxykinase | low | > 100 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_08160 | | hypothetical protein | 0.33 | AO353_11775 | | phosphoenolpyruvate carboxykinase [ATP] | low | > 101 |
| Pseudomonas sp. SVBP6 | 0.47 | COO64_RS13000 | | YggS family pyridoxal phosphate-dependent enzyme | 0.33 | COO64_RS00660 | | phosphoenolpyruvate carboxykinase | low | > 93 |
| Kangiella aquimarina DSM 16071 | 0.44 | B158DRAFT_0196 | | pyridoxal phosphate enzyme, YggS family | 0.76 | B158DRAFT_2395 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 40 |
| Marinobacter adhaerens HP15 | 0.42 | HP15_288 | | alanine racemase domain protein | 0.36 | HP15_3498 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.31 | TX73_014475 | | YggS family pyridoxal phosphate-dependent enzyme | 0.42 | TX73_001865 | | phosphoenolpyruvate carboxykinase | — | — |
| Xanthobacter sp. DMC5 | 0.31 | GFF1427 | | Pyridoxal phosphate homeostasis protein | 0.40 | GFF4136 | | Phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Agrobacterium fabrum C58 | 0.31 | Atu2747 | | hypothetical protein | 0.42 | Atu0035 | | phosphoenolpyruvate carboxykinase | low | > 89 |
| Dinoroseobacter shibae DFL-12 | 0.29 | Dshi_0042 | | alanine racemase domain protein (RefSeq) | 0.39 | Dshi_0213 | | Phosphoenolpyruvate carboxykinase (ATP) (RefSeq) | low | > 64 |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | 0.40 | ABIE40_RS19415 | | phosphoenolpyruvate carboxykinase | — | — |
| Bosea sp. OAE506 | 0.29 | ABIE41_RS04720 | | YggS family pyridoxal phosphate-dependent enzyme | 0.40 | ABIE41_RS02665 | | phosphoenolpyruvate carboxykinase | low | > 77 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.29 | CA265_RS06285 | | YggS family pyridoxal phosphate enzyme | 0.41 | CA265_RS23490 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 88 |
| Cellulophaga baltica 18 | 0.29 | M666_RS17595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.43 | M666_RS03005 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 67 |
| Sinorhizobium meliloti 1021 | 0.28 | SMc02812 | | hypothetical protein | 0.41 | SMc02562 | | phosphoenolpyruvate carboxykinase | low | > 103 |
| Phaeobacter inhibens DSM 17395 | 0.27 | PGA1_c33360 | | putative alanine racemase | 0.39 | PGA1_c01140 | | phosphoenolpyruvate carboxykinase | low | > 62 |
| Fusobacterium nucleatum SB010 | 0.27 | HUW76_07280 | | YggS family pyridoxal phosphate-dependent enzyme | 0.39 | HUW76_06485 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 35 |
| Parabacteroides merdae CL09T00C40 | 0.27 | HMPREF1078_RS15965 | | YggS family pyridoxal phosphate-dependent enzyme | 0.72 | HMPREF1078_RS07235 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.27 | BT1332 | | conserved hypothetical protein (NCBI ptt file) | 0.73 | BT2790 | | phosphoenolpyruvate carboxykinase [ATP] (NCBI ptt file) | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.26 | HMPREF1058_RS06240 | | YggS family pyridoxal phosphate-dependent enzyme | 0.72 | HMPREF1058_RS10065 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Phocaeicola dorei CL03T12C01 | 0.26 | ABI39_RS20000 | | YggS family pyridoxal phosphate-dependent enzyme | 0.72 | ABI39_RS06685 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.26 | Echvi_2233 | | pyridoxal phosphate enzyme, YggS family | 0.42 | Echvi_2957 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.26 | CA264_06410 | | YggS family pyridoxal phosphate enzyme | 0.44 | CA264_05270 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Sphingobium sp. HT1-2 | 0.25 | GFF4152 | | Pyridoxal phosphate-containing protein YggS | 0.40 | GFF3825 | | Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) | low | > 95 |
| Bacteroides stercoris CC31F | 0.24 | HMPREF1181_RS10865 | | YggS family pyridoxal phosphate-dependent enzyme | 0.72 | HMPREF1181_RS01170 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Bacteroides ovatus ATCC 8483 | 0.24 | BACOVA_00593 | | pyridoxal phosphate enzyme, YggS family | 0.72 | BACOVA_02011 | | phosphoenolpyruvate carboxykinase (ATP) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.22 | Ga0059261_2216 | | pyridoxal phosphate enzyme, YggS family | 0.39 | Ga0059261_0913 | | phosphoenolpyruvate carboxykinase (ATP) | low | > 68 |
Not shown: 42 genomes with orthologs for CSW01_02455 only; 0 genomes with orthologs for CSW01_13810 only