Conservation of cofitness between CSW01_03090 and CSW01_13690 in Vibrio cholerae E7946 ATCC 55056

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase 1.0 CSW01_13690 two-component system sensor histidine kinase EnvZ 0.67 19
Pectobacterium carotovorum WPP14 0.65 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 HER17_RS01705 two-component system sensor histidine kinase EnvZ low > 75
Erwinia amylovora T8 0.65 OLJFJH_02280 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.49 OLJFJH_04155 two-component system sensor histidine kinase EnvZ low > 58
Escherichia coli ECOR38 0.64 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 HEPCGN_15850 envZ two-component system sensor histidine kinase EnvZ low > 88
Escherichia fergusonii Becca 0.64 EFB2_00677 Ribosomal RNA small subunit methyltransferase I 0.49 EFB2_00424 Osmolarity sensor protein EnvZ low > 86
Escherichia coli Nissle 1917 0.64 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.49 ECOLIN_RS19450 two-component system sensor histidine kinase EnvZ low > 55
Escherichia coli BW25113 0.64 b3146 yraL predicted methyltransferase (NCBI) 0.49 b3404 envZ osmolarity sensor protein (NCBI) low > 76
Escherichia coli BL21 0.64 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent 0.48 ECD_03256 sensory histidine kinase in two-component regulatory system with OmpR low > 61
Escherichia coli ECRC102 0.64 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 NIAGMN_14810 envZ two-component system sensor histidine kinase EnvZ low > 80
Dickeya dadantii 3937 0.64 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.50 DDA3937_RS19615 two-component system sensor histidine kinase EnvZ low > 74
Escherichia coli ECRC101 0.64 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 MCAODC_07570 envZ two-component system sensor histidine kinase EnvZ low > 88
Escherichia coli ECRC99 0.64 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 KEDOAH_11100 envZ two-component system sensor histidine kinase EnvZ — —
Escherichia coli ECRC100 0.64 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 OKFHMN_17040 envZ two-component system sensor histidine kinase EnvZ low > 79
Escherichia coli ECRC98 0.64 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 JDDGAC_20670 envZ two-component system sensor histidine kinase EnvZ low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I 0.49 OHPLBJKB_00299 Osmolarity sensor protein EnvZ 0.77 2
Erwinia tracheiphila SCR3 0.64 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 LU632_RS22935 envZ two-component system sensor histidine kinase EnvZ 0.56 61
Dickeya dianthicola 67-19 0.64 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.50 HGI48_RS19745 two-component system sensor histidine kinase EnvZ low > 71
Erwinia tracheiphila HP pepo 2.2 0.63 IJEDHG_06680 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 IJEDHG_11960 envZ two-component system sensor histidine kinase EnvZ low > 61
Shewanella loihica PV-4 0.63 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) 0.39 Shew_3638 envZ osmolarity sensor protein (RefSeq) low > 60
Dickeya dianthicola ME23 0.63 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.50 DZA65_RS20835 two-component system sensor histidine kinase EnvZ low > 75
Pantoea agglomerans CFBP13505 P0401 0.63 PagCFBP13505_RS11450 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 PagCFBP13505_RS18345 two-component system sensor histidine kinase EnvZ low > 74
Escherichia coli ECRC62 0.63 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.49 BNILDI_02690 envZ two-component system sensor histidine kinase EnvZ low > 75
Escherichia coli ECOR27 0.63 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.49 NOLOHH_08830 envZ two-component system sensor histidine kinase EnvZ low > 76
Shewanella oneidensis MR-1 0.63 SO0301 hypothetical methyltransferase (NCBI ptt file) 0.39 SO4634 envZ osmolarity sensor protein EnvZ (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.62 Shewana3_3879 hypothetical protein (RefSeq) 0.39 Shewana3_4018 envZ osmolarity sensor protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.62 Sama_3353 hypothetical protein (RefSeq) 0.39 Sama_3511 envZ osmolarity sensor protein (RefSeq) low > 62
Enterobacter asburiae PDN3 0.61 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.49 EX28DRAFT_4139 Signal transduction histidine kinase low > 76
Enterobacter sp. TBS_079 0.61 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I 0.49 MPMX20_04291 Osmolarity sensor protein EnvZ low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF1521 rRNA small subunit methyltransferase I 0.49 GFF614 Osmolarity sensory histidine kinase EnvZ low > 78
Rahnella sp. WP5 0.61 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.47 EX31_RS04795 two-component system sensor histidine kinase EnvZ low > 89
Pantoea sp. MT58 0.61 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 IAI47_01825 two-component system sensor histidine kinase EnvZ low > 76
Klebsiella michiganensis M5al 0.60 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase 0.49 BWI76_RS26670 two-component sensor histidine kinase 0.30 25
Serratia liquefaciens MT49 0.59 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 IAI46_23785 two-component system sensor histidine kinase EnvZ low > 86
Klebsiella pneumoniae MKP103 0.58 KDGMDA_05780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.49 KDGMDA_06975 two-component system sensor histidine kinase EnvZ low > 95
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.24 PFLU_RS01285 HAMP domain-containing protein low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.24 PFLU_RS01285 HAMP domain-containing protein low > 109
Alteromonas macleodii MIT1002 0.49 MIT1002_03113 Ribosomal RNA small subunit methyltransferase I 0.34 MIT1002_03969 Osmolarity sensor protein EnvZ low > 70
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.28 B158DRAFT_0685 Signal transduction histidine kinase low > 40
Acinetobacter radioresistens SK82 0.44 MPMX26_02282 Ribosomal RNA small subunit methyltransferase I 0.22 MPMX26_02839 Osmolarity sensor protein EnvZ low > 36
Acinetobacter baumannii LAC-4 0.44 RR41_RS09275 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.22 RR41_RS01385 HAMP domain-containing protein — —
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS00655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.21 QEN71_RS22035 ATP-binding protein 0.82 114
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS01940 16S rRNA methyltransferase 0.21 BPHYT_RS09310 sensor histidine kinase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_02152 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.21 H281DRAFT_00885 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ low > 103
Paraburkholderia graminis OAS925 0.38 ABIE53_000470 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.21 ABIE53_002100 two-component system osmolarity sensor histidine kinase EnvZ low > 113
Castellaniella sp019104865 MT123 0.38 ABCV34_RS14320 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.21 ABCV34_RS08590 ATP-binding protein low > 48
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS19740 16S rRNA methyltransferase 0.20 RR42_RS09525 histidine kinase low > 128
Variovorax sp. SCN45 0.33 GFF3735 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) 0.19 GFF409 Osmolarity sensory histidine kinase EnvZ low > 127
Variovorax sp. OAS795 0.33 ABID97_RS00285 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.18 ABID97_RS17270 ATP-binding protein low > 91

Not shown: 55 genomes with orthologs for CSW01_03090 only; 0 genomes with orthologs for CSW01_13690 only