Conservation of cofitness between CSW01_18235 and CSW01_13525 in Vibrio cholerae E7946 ATCC 55056

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_18235 arginine decarboxylase 1.0 CSW01_13525 DNA-binding transcriptional regulator CytR 0.68 18
Shewanella amazonensis SB2B 0.67 Sama_1963 arginine decarboxylase (RefSeq) 0.36 Sama_0294 LacI family transcription regulator (RefSeq) low > 62
Shewanella loihica PV-4 0.66 Shew_1619 arginine decarboxylase (RefSeq) 0.21 Shew_1870 LacI family transcription regulator (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.66 GFF2316 Transcriptional (co)regulator CytR low > 78
Escherichia coli ECRC100 0.52 OKFHMN_19305 speA biosynthetic arginine decarboxylase 0.67 OKFHMN_13725 cytR DNA-binding transcriptional regulator CytR low > 79
Escherichia coli ECRC101 0.52 MCAODC_09825 speA biosynthetic arginine decarboxylase 0.67 MCAODC_04225 cytR DNA-binding transcriptional regulator CytR low > 87
Escherichia coli ECOR27 0.52 NOLOHH_11175 speA biosynthetic arginine decarboxylase 0.67 NOLOHH_05870 cytR DNA-binding transcriptional regulator CytR low > 76
Escherichia coli ECRC62 0.52 BNILDI_09755 speA biosynthetic arginine decarboxylase 0.67 BNILDI_05660 cytR DNA-binding transcriptional regulator CytR low > 75
Escherichia coli ECRC102 0.52 NIAGMN_17070 speA biosynthetic arginine decarboxylase 0.67 NIAGMN_11480 cytR DNA-binding transcriptional regulator CytR low > 80
Pantoea sp. MT58 0.52 IAI47_03660 biosynthetic arginine decarboxylase 0.66 IAI47_00860 DNA-binding transcriptional regulator CytR low > 76
Escherichia fergusonii Becca 0.52 EFB2_00962 Biosynthetic arginine decarboxylase 0.67 EFB2_04684 HTH-type transcriptional repressor CytR low > 86
Escherichia coli BW25113 0.52 b2938 speA arginine decarboxylase (NCBI) 0.67 b3934 cytR DNA-binding transcriptional dual regulator (NCBI) low > 76
Escherichia coli BL21 0.52 ECD_02768 biosynthetic arginine decarboxylase, PLP-binding 0.67 ECD_03819 Anti-activator for CytR-CRP nucleoside utilization regulon low > 61
Escherichia coli Nissle 1917 0.52 ECOLIN_RS16350 biosynthetic arginine decarboxylase 0.67 ECOLIN_RS22650 DNA-binding transcriptional regulator CytR low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_00778 Biosynthetic arginine decarboxylase 0.67 OHPLBJKB_04117 HTH-type transcriptional repressor CytR low > 74
Enterobacter sp. TBS_079 0.52 MPMX20_03799 Biosynthetic arginine decarboxylase 0.68 MPMX20_04535 HTH-type transcriptional repressor CytR low > 85
Escherichia coli ECOR38 0.52 HEPCGN_18610 speA biosynthetic arginine decarboxylase 0.67 HEPCGN_12370 cytR DNA-binding transcriptional regulator CytR low > 88
Escherichia coli ECRC99 0.52 KEDOAH_08835 speA biosynthetic arginine decarboxylase 0.67 KEDOAH_14435 cytR DNA-binding transcriptional regulator CytR — —
Escherichia coli ECRC98 0.52 JDDGAC_22935 speA biosynthetic arginine decarboxylase 0.67 JDDGAC_17350 cytR DNA-binding transcriptional regulator CytR 0.45 15
Enterobacter asburiae PDN3 0.52 EX28DRAFT_2978 arginine decarboxylase (EC 4.1.1.19) 0.67 EX28DRAFT_4407 Transcriptional regulators low > 76
Serratia liquefaciens MT49 0.52 IAI46_21140 biosynthetic arginine decarboxylase 0.69 IAI46_24560 DNA-binding transcriptional regulator CytR low > 87
Dickeya dadantii 3937 0.52 DDA3937_RS18535 biosynthetic arginine decarboxylase 0.61 DDA3937_RS00930 DNA-binding transcriptional regulator CytR low > 74
Dickeya dianthicola ME23 0.52 DZA65_RS19595 biosynthetic arginine decarboxylase 0.61 DZA65_RS21490 DNA-binding transcriptional regulator CytR low > 75
Dickeya dianthicola 67-19 0.52 HGI48_RS18460 biosynthetic arginine decarboxylase 0.61 HGI48_RS20445 DNA-binding transcriptional regulator CytR low > 71
Klebsiella pneumoniae MKP103 0.52 KDGMDA_04560 biosynthetic arginine decarboxylase 0.67 KDGMDA_09275 DNA-binding transcriptional regulator CytR low > 95
Klebsiella michiganensis M5al 0.52 BWI76_RS24030 arginine decarboxylase 0.68 BWI76_RS00765 DNA-binding transcriptional regulator CytR low > 92
Pantoea agglomerans CFBP13505 P0401 0.52 PagCFBP13505_RS16040 biosynthetic arginine decarboxylase 0.66 PagCFBP13505_RS18480 DNA-binding transcriptional regulator CytR low > 74
Erwinia tracheiphila HP pepo 2.2 0.51 IJEDHG_03400 speA biosynthetic arginine decarboxylase 0.64 IJEDHG_13000 cytR DNA-binding transcriptional regulator CytR low > 61
Erwinia tracheiphila SCR3 0.51 LU632_RS05510 speA biosynthetic arginine decarboxylase 0.64 LU632_RS19660 cytR DNA-binding transcriptional regulator CytR low > 73
Erwinia amylovora T8 0.51 OLJFJH_08600 biosynthetic arginine decarboxylase 0.64 OLJFJH_06075 DNA-binding transcriptional regulator CytR low > 58
Rahnella sp. WP5 0.51 EX31_RS21355 biosynthetic arginine decarboxylase 0.70 EX31_RS14230 DNA-binding transcriptional regulator CytR low > 89
Pectobacterium carotovorum WPP14 0.50 HER17_RS02665 biosynthetic arginine decarboxylase 0.66 HER17_RS00865 DNA-binding transcriptional regulator CytR low > 75
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) 0.38 Pf1N1B4_4095 Transcriptional regulator, LacI family — —
Pseudomonas sp. DMC3 0.43 GFF3322 Biosynthetic arginine decarboxylase 0.38 GFF1074 HTH-type transcriptional repressor CytR low > 89
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.4909.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.24 Xcc-8004.1274.1 transcriptional regulator lacI family — —
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_3504 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.39 Pf6N2E2_322 Transcriptional regulator, LacI family low > 103
Lysobacter sp. OAE881 0.43 ABIE51_RS00125 arginine decarboxylase 0.26 ABIE51_RS10155 LacI family DNA-binding transcriptional regulator — —
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_08155 arginine decarboxylase 0.40 AO356_22285 LacI family transcriptional regulator — —
Pseudomonas sp. RS175 0.43 PFR28_05228 Biosynthetic arginine decarboxylase 0.40 PFR28_02584 HTH-type transcriptional repressor CytR low > 88
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS15580 biosynthetic arginine decarboxylase 0.47 ABZR86_RS01690 LacI family DNA-binding transcriptional regulator — —
Bacteroides stercoris CC31F 0.39 HMPREF1181_RS02535 biosynthetic arginine decarboxylase 0.24 HMPREF1181_RS05535 LacI family DNA-binding transcriptional regulator low > 56
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS12110 biosynthetic arginine decarboxylase 0.26 HMPREF1058_RS09530 LacI family DNA-binding transcriptional regulator low > 67
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS04690 biosynthetic arginine decarboxylase 0.26 ABI39_RS03985 LacI family DNA-binding transcriptional regulator low > 72
Bacteroides ovatus ATCC 8483 0.39 BACOVA_01911 arginine 2-monooxygenase 0.25 BACOVA_03411 sugar-binding domain protein low > 96
Bacteroides thetaiotaomicron VPI-5482 0.39 BT3394 putative arginine decarboxylase (NCBI ptt file) 0.26 BT3613 LacI family transcriptional regulator (NCBI ptt file) low > 81
Alteromonas macleodii MIT1002 0.33 MIT1002_03905 Biosynthetic arginine decarboxylase 0.39 MIT1002_00363 HTH-type transcriptional repressor CytR 0.70 60

Not shown: 31 genomes with orthologs for CSW01_18235 only; 23 genomes with orthologs for CSW01_13525 only