| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_09645 | | C4-dicarboxylate ABC transporter permease | 1.0 | CSW01_12835 | | phosphocarrier protein NPr | 0.46 | 9 |
| Phaeobacter inhibens DSM 17395 | 0.40 | PGA1_c20670 | | TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, small permease component (from data) | 0.40 | PGA1_c01200 | | putative phosphocarrier, HPr family | low | > 62 |
| Shewanella loihica PV-4 | 0.24 | Shew_1445 | | dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component (from data) | 0.49 | Shew_3315 | | phosphotransferase system, phosphocarrier protein HPr (RefSeq) | — | — |
| Castellaniella sp019104865 MT123 | 0.21 | ABCV34_RS05055 | | TRAP transporter small permease | 0.37 | ABCV34_RS04785 | | HPr family phosphocarrier protein | — | — |
| Shewanella amazonensis SB2B | 0.20 | Sama_2210 | | alpha-ketoglutarate TRAP transporter, small permease component (from data) | 0.55 | Sama_3092 | | phosphocarrier protein NPR (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.20 | Shewana3_1415 | | tripartite ATP-independent periplasmic transporter DctQ (RefSeq) | 0.55 | Shewana3_0668 | | HPr family phosphocarrier protein (RefSeq) | low | > 73 |
| Azospirillum sp. SherDot2 | 0.18 | MPMX19_00660 | | C4-dicarboxylate TRAP transporter small permease protein DctQ | 0.41 | MPMX19_02624 | | Phosphocarrier protein NPr | — | — |
| Herbaspirillum seropedicae SmR1 | 0.18 | HSERO_RS04245 | | C4-dicarboxylate ABC transporter permease | 0.33 | HSERO_RS00445 | | phosphocarrier protein HPr | — | — |
| Magnetospirillum magneticum AMB-1 | 0.18 | AMB_RS04555 | | TRAP transporter small permease | 0.47 | AMB_RS22225 | | HPr family phosphocarrier protein | — | — |
| Dechlorosoma suillum PS | 0.18 | Dsui_3154 | | TRAP-type C4-dicarboxylate transport system, small permease component | 0.41 | Dsui_0743 | | phosphotransferase system HPr (HPr) family protein | low | > 51 |
| Pseudomonas segetis P6 | 0.17 | ACVTMO_RS12025 | | TRAP transporter small permease | 0.36 | ACVTMO_RS19140 | | HPr family phosphocarrier protein | — | — |
| Pseudomonas aeruginosa PUPa3 | 0.16 | DQ20_RS44755 | | TRAP transporter small permease | 0.38 | DQ20_RS56605 | | HPr family phosphocarrier protein | — | — |
| Pseudomonas aeruginosa MRSN321 | 0.16 | DY961_RS08045 | | TRAP transporter small permease | 0.38 | DY961_RS24145 | | HPr family phosphocarrier protein | low | > 100 |
| Pseudomonas aeruginosa PA14 | 0.16 | IKLFDK_03930 | | C4-dicarboxylate ABC transporter | 0.38 | IKLFDK_01750 | | Phosphocarrier protein HPr | low | > 98 |
| Pseudomonas fluorescens SBW25 | 0.15 | PFLU_RS16925 | | TRAP transporter small permease | 0.33 | PFLU_RS04380 | | HPr family phosphocarrier protein | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.15 | PFLU_RS16925 | | TRAP transporter small permease | 0.33 | PFLU_RS04380 | | HPr family phosphocarrier protein | — | — |
| Pseudomonas sp. RS175 | 0.15 | PFR28_00120 | | C4-dicarboxylate TRAP transporter small permease protein DctQ | 0.37 | PFR28_00169 | | Phosphocarrier protein NPr | low | > 88 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.14 | GFF5017 | | TRAP-type C4-dicarboxylate transport system, small permease component | 0.36 | GFF2930 | | Phosphotransferase system, phosphocarrier protein HPr | — | — |
| Variovorax sp. OAS795 | 0.14 | ABID97_RS26065 | | TRAP transporter small permease | 0.39 | ABID97_RS00570 | | HPr family phosphocarrier protein | 0.23 | 63 |
| Pseudomonas simiae WCS417 | 0.14 | PS417_14905 | | C4-dicarboxylate ABC transporter | 0.33 | PS417_04325 | | phosphocarrier protein HPr | — | — |
| Pseudomonas sp. DMC3 | 0.14 | GFF1145 | | C4-dicarboxylate TRAP transporter small permease protein DctQ | 0.36 | GFF1824 | | Phosphocarrier protein NPr | low | > 89 |
| Dinoroseobacter shibae DFL-12 | 0.11 | Dshi_1833 | | Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq) | 0.37 | Dshi_0207 | | Phosphotransferase system, phosphocarrier protein HPr (RefSeq) | low | > 64 |
Not shown: 2 genomes with orthologs for CSW01_09645 only; 79 genomes with orthologs for CSW01_12835 only